Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03997 ATGTGCTTAGTAACAACGGTGGCGCATCAAAGGGGGTCAGGTGAGTTCATCCGGTTCACGGCGCAGCGTGGCGGTGACGGCGGAGATGAGGAACACGGCGGCGGCGGTGGTGGAAGAAGAAGCAGATCATATGAACAAGAAGTAGGTACGAAGAAAGAAGATGAGGTGGAAAGAATAACAATGCAAGGTTCAATGGAATTGAGTGAGATCATGCTTTCGGCTCTGACAAATAATGTTGTGTCATCGGGTTCTTCTTCTTCTCAATCTCATCAAAGCGGCACCGACTGGTTTGCTGCTGCTTCTCAGCATCATCCTATGATGACGTCAGATTTTGGACACGTGTCGTCTTTGTCTTCTTTTACTTCTTCATCATCATCTTCTGCTTCTGCTTCCTCTTCATGGGTTGGCCAAAAGAGAGGGCGTGAAGAACAACACCACATGATTGGTGCTTCTTCATCATCTTCTTCTTCCTCTTCTCAATCTTATCAATATCAACATCAACATCAACATCATCATAATTTGGTTCAGCATCCTGTTCCTAGATTCTTTGGAACCAATCTTGGTGACTTCAAGGTGCTACCTTCTCATCAACCAGAATCATCTTCAGTGACAGAAGAAGCTTCTTCCATCACCACGGCGGCCACGGCAGCCACCGTAACCACCATGACACCGGCAACGCCGTCGAGCGAAGCGGCATCCTATGAAGAAACAGGGGAGAGAAGGAGAAGGTACAGAGGAGTTAGGCAAAGGCCATGGGGAAAATGGGCAGCGGAGATTCGAGATCCACACAAGGCGGCAAGAGTGTGGCTCGGAACATTCGACACGGCGGAAGCCGCCGCAAGAGCTTACGACGAAGCCGCATTGAGATTCAGAGGAAACAGAGCAAAACTCAATTTTCCAGAGAATGTAAGAGCAGTGCCACGCCCAATTCAACCACCTTTCTCTGCCTCCGCCGCCACAACCACCGCCACCACACATTTCCGCCACCCTCCGCCGCAGATGTACCATCCAGAACCACCACCACCACCACCATTGGTTCATCAGCAGCAGCCACAGTTTCAGGGAAACAATGAGATCAGAGACTATTTGGAATATTCTCTGCTTCTTCAGAGTTCTGGTGATTTTCAACAACATCAACAACAACAAATTAATCAACCACCTTCGAATTTGTTACAACAGTTGTACTATAATTCACAATTGGCGGCGCTTCAATCTTCTTCATCATCATCTTCTTCTTCTTCAGTTGTGCCACCAGCTTCGGTGTTTTCAGCTTCTGCTCAACCTTCCTCTGCTTCACTTCCCCTGTTTCCTAGTCAGCAAATGGTGTTTTTCCGGCCACCGGGAAACCAACCTCACGGCGGCGGAGACGGTTCCGGCGGGTTAAACTTTCTCCCTTCAACTTGGTCAGATACCAGTGGCTATCCACCACCACCTGGTTGA 1440 0.4896 MCLVTTVAHQRGSGEFIRFTAQRGGDGGDEEHGGGGGGRRSRSYEQEVGTKKEDEVERITMQGSMELSEIMLSALTNNVVSSGSSSSQSHQSGTDWFAAASQHHPMMTSDFGHVSSLSSFTSSSSSSASASSSWVGQKRGREEQHHMIGASSSSSSSSSQSYQYQHQHQHHHNLVQHPVPRFFGTNLGDFKVLPSHQPESSSVTEEASSITTAATAATVTTMTPATPSSEAASYEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRAVPRPIQPPFSASAATTTATTHFRHPPPQMYHPEPPPPPPLVHQQQPQFQGNNEIRDYLEYSLLLQSSGDFQQHQQQQINQPPSNLLQQLYYNSQLAALQSSSSSSSSSSVVPPASVFSASAQPSSASLPLFPSQQMVFFRPPGNQPHGGGDGSGGLNFLPSTWSDTSGYPPPPG 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03997 479 MobiDBLite consensus disorder prediction 314 328 - -
Aip05g03997 479 MobiDBLite consensus disorder prediction 115 172 - -
Aip05g03997 479 MobiDBLite consensus disorder prediction 223 245 - -
Aip05g03997 479 MobiDBLite consensus disorder prediction 195 212 - -
Aip05g03997 479 MobiDBLite consensus disorder prediction 20 53 - -
Aip05g03997 479 SUPERFAMILY DNA-binding domain 243 301 IPR016177 GO:0003677
Aip05g03997 479 Gene3D AP2/ERF domain 242 302 IPR036955 GO:0003700|GO:0006355
Aip05g03997 479 MobiDBLite consensus disorder prediction 24 53 - -
Aip05g03997 479 ProSiteProfiles AP2/ERF domain profile. 243 300 IPR001471 GO:0003700|GO:0006355
Aip05g03997 479 MobiDBLite consensus disorder prediction 441 479 - -
Aip05g03997 479 SMART rav1_2 243 306 IPR001471 GO:0003700|GO:0006355
Aip05g03997 479 PANTHER DNA-BINDING DOMAIN 123 440 IPR044808 GO:0003700|GO:0009873
Aip05g03997 479 PRINTS Ethylene responsive element binding protein signature 244 255 IPR001471 GO:0003700|GO:0006355
Aip05g03997 479 PRINTS Ethylene responsive element binding protein signature 266 282 IPR001471 GO:0003700|GO:0006355
Aip05g03997 479 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 123 440 - -
Aip05g03997 479 MobiDBLite consensus disorder prediction 115 137 - -
Aip05g03997 479 MobiDBLite consensus disorder prediction 308 351 - -
Aip05g03997 479 MobiDBLite consensus disorder prediction 147 169 - -
Aip05g03997 479 MobiDBLite consensus disorder prediction 193 212 - -
Aip05g03997 479 MobiDBLite consensus disorder prediction 332 348 - -
Aip05g03997 479 CDD AP2 251 302 IPR001471 GO:0003700|GO:0006355
Aip05g03997 479 Pfam AP2 domain 243 292 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03997 Aip-Chr5 148235081 148237324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03997 185 312 AP2-EREBP Transcription Factor Family AT2G33710 50.781 3.36e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g03997 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03997 - - ahf:112803013 596.275