LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip05g03980	ATGATAATGGTGGAACCATCATCATCGTCATCTTCTTCTTCCTTCACATGgaattggatctacgacgttttcctcagtttcagaggagaagatactagaaacggtttcaccagtaatctctaccatgcactggatcaaaaggggatccacaccttcattgatgatgaggagcttcaaaagggggaagaaattactccagcacttgtgaaggctattcaagaatctaggatcgccatcgttgtgttctctaagaactatgcatcatctgctttctgtttggacgagcttgcaaagattcttgagctgttgaaacttgaaggaagattggtttggccaatcttttatgatgtggatccatcagatgttcgccatcagaaaggtagctatgcggaggcattagcaaaacatgaagaacggttccagaatgatgacaatggcaaggtacaaaaatggaggaatgctctacgtgaagcagctaatttgtccggttCACATTTCAAACCAGGGTCTCAACAGGAATACAAGTTTATTGAAAACATTGTTAGTGACATCTCCAAAAAGCTGAATTACACTCCCTTACATGTTGCTGACAACCCGGTTGGCCTGGAATCACCAGTGCTAGAAGTGAAGTCTCTGCTACAACTTGGGTCTAATAATGCTGAAGATGGAGTACACATAgttgggatttgtggaagtgggggaataggtaaaacaacacttgcaagagctctgtataactctgttgctgatcaatttgatggtttgtgttttcttgctgatgttagagaaaatgcaatcaacaagaatcatggtcttgcacaactccaagagacacttctttctgaagttcttgatgagagtaatataagaataagagatgtcaacagagggattccaatgataaaaaggaggcttcaacaaaagaagattcttttgattcttgatgatgttgatgacttaacccagttaagggctattgccggaggcgatgattggttcggttcaggtagtcggataattatcacttctagggacaaacatttgttagaagcacaatatgggatgaatccaaacaagatttatgaggtcaaagagttaaacaaaaaagaagctcttgaattgttctgttggaaggcctttagaagcaacaaagttaagtcagggtatgaagatatttcaaaccgtgttctttcttatgctggtggtgttcctttggctttggaagtaataggctctaacttgtataacaagagcatagatcaatggagctctgcattagataagtacaaaaaaattcccattaagaagattcaagaagtgctcgaggtaagttatgatggattacatgaagatgagaagagtatttttcttgatatagcttgtttcttcaacaaggaaaagatatcatatgtgaagcaaatgctacatgtccgtggtttccaccctgaagatggtattgacgttttgattgacagatctttgatgaagattgacaagaataataattgtgtgagaatgcatgatttgattcaagatatgggtagagaaattgttagaagggaatcaacttctaagcctggcaaacgttctagactatggaatgatgaggaCATTGTTCATGTTCTAGAAAATGACATGGGAAGTGATAGAGTTGAAGTCATAATTTTGCACTCAAGCAAGCGTAGAGTGAATTGGAATGGAAAAGCATTCAAGAAAATGAGGAATCTCAAAGTTCTCATATTCTGGGATGTACATTTTTCAGTTGGTCCTGATCATCTGCCAAACAGTTTAAGAGTGTTGGAGTGGGATGGATATCCATCACCATCATTACCCTCTGATTTTCATCCCACTAAACTCTTCATACTCAATTTGAGCAACAGTTCTCTCAAACTGGACAATCCACTCAAGAATTTCAATTCCTTGAGTTTCATGGATTTTGGAGAGTGTGAATTCTTGACAGAAGTACCTGACCTTTCAGGAGTCCCAAATCTAGGAGCACTGTGTCTTGATAACTGCTCCAATTTAGTTAAAGTCCACAGCTCAGTTGGATTTCTGGAGAAATTGATTTTGCTGAGTGTTCAACGATGCACCAAGCTCCGCACTCTCGTAGACGAAATCAATCTTCCATCTCTTGAGACTCTGGACCTCAGTGGCTGCACAAGCCTTGTGTGCTTCCCAGAAATTGTAGCAACTATGGAAAACATTCGAGTAATTTACTTAGACAGCACCGCCATAGATGATTTACCACTCACCATGTTCAATCTTGTTAGCCTGGAGCGCTTGTATCTCAGGAACTGCACAGATCTGAAAACTCTTCAAGGCTGCATTCGCTTGTTACCTAAACTCGAGGTCGTTATTTTTCCGAATCAAAGAGGATTTCGATTGAATTCCGTGGTACACGGATTCCAGCAACAGATATCGTCAGAGTTCATGATTCACCGCGGTCCTCGTCCTCTGGTTCCAATTTGGGAAGCTTATTGCACAGTCTCCAGTGATTTGAATCTCATCCGATTATATCACCCTTGGCGCCGCCATGTTTCGCCGGAAGAAGAACGCGGCGCCAGATCTGAGGGTGCATCGAGTGTGAGCTTCTGGTACCGGAGAAAACTCCCGGGGGTAATCAGCGCGTTGTTTACGACTGAAACAACGGACATTGACGCCTTTGGCTCTGTTCTAGAGTTTAGGGTTCTTGTGTTGGTGAATCGCAGTTACATGTTCTCTTCGTCGAGTGTTTACGTAATCTCTGAGACAAGAACGAGACAGCCATTACTGGTGAATGTAATTCTCGGCACACTTCAAGGCCACGGCGAGCGATATGTTTTCAGATCGGAGTCGGAATCGGAGAATGGATGGAATCTGGTGCAGATTGTTGGCGAGATGTATTTTCACAGGCCGTGTACGGAGGGGGAGGGGAAGAGCACGGCGGTGGGAGCAGTTATGAAACGGAGCAGCCTTCTTTTTGACAGGGAATATTGTTGCATGGAGGATATTCGATATTCAAACGGTGACACGTGTGAAAGTGATGCCCTTGAGTCACCAAGAGATATGATTATGCGTGATCCTGGGGATGATGATAATGCTACCGGTGTTGATCGTAATTTGATTAAAGTTAGCTTACCAAATATGTTATGGTTCATGCGGCGTATGGCCCCTCTCTGA	3159	0.251	MIMVEPSSSSSSSSFTWNWIYDVFLSFRGEDTRNGFTSNLYHALDQKGIHTFIDDEELQKGEEITPALVKAIQESRIAIVVFSKNYASSAFCLDELAKILELLKLEGRLVWPIFYDVDPSDVRHQKGSYAEALAKHEERFQNDDNGKVQKWRNALREAANLSGSHFKPGSQQEYKFIENIVSDISKKLNYTPLHVADNPVGLESPVLEVKSLLQLGSNNAEDGVHIVGICGSGGIGKTTLARALYNSVADQFDGLCFLADVRENAINKNHGLAQLQETLLSEVLDESNIRIRDVNRGIPMIKRRLQQKKILLILDDVDDLTQLRAIAGGDDWFGSGSRIIITSRDKHLLEAQYGMNPNKIYEVKELNKKEALELFCWKAFRSNKVKSGYEDISNRVLSYAGGVPLALEVIGSNLYNKSIDQWSSALDKYKKIPIKKIQEVLEVSYDGLHEDEKSIFLDIACFFNKEKISYVKQMLHVRGFHPEDGIDVLIDRSLMKIDKNNNCVRMHDLIQDMGREIVRRESTSKPGKRSRLWNDEDIVHVLENDMGSDRVEVIILHSSKRRVNWNGKAFKKMRNLKVLIFWDVHFSVGPDHLPNSLRVLEWDGYPSPSLPSDFHPTKLFILNLSNSSLKLDNPLKNFNSLSFMDFGECEFLTEVPDLSGVPNLGALCLDNCSNLVKVHSSVGFLEKLILLSVQRCTKLRTLVDEINLPSLETLDLSGCTSLVCFPEIVATMENIRVIYLDSTAIDDLPLTMFNLVSLERLYLRNCTDLKTLQGCIRLLPKLEVVIFPNQRGFRLNSVVHGFQQQISSEFMIHRGPRPLVPIWEAYCTVSSDLNLIRLYHPWRRHVSPEEERGARSEGASSVSFWYRRKLPGVISALFTTETTDIDAFGSVLEFRVLVLVNRSYMFSSSSVYVISETRTRQPLLVNVILGTLQGHGERYVFRSESESENGWNLVQIVGEMYFHRPCTEGEGKSTAVGAVMKRSSLLFDREYCCMEDIRYSNGDTCESDALESPRDMIMRDPGDDDNATGVDRNLIKVSLPNMLWFMRRMAPL	1052

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip05g03980	1052	SMART	AAA_5	223	366	IPR003593	-
	Aip05g03980	1052	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	22	715	IPR044974	GO:0006952
	Aip05g03980	1052	Gene3D	-	194	355	IPR027417	-
	Aip05g03980	1052	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	163	IPR035897	-
	Aip05g03980	1052	SUPERFAMILY	L domain-like	563	794	-	-
	Aip05g03980	1052	SMART	till_3	20	161	IPR000157	GO:0007165
	Aip05g03980	1052	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	459	IPR027417	-
	Aip05g03980	1052	ProSiteProfiles	TIR domain profile.	19	188	IPR000157	GO:0007165
	Aip05g03980	1052	Pfam	NB-ARC domain	219	445	IPR002182	GO:0043531
	Aip05g03980	1052	Gene3D	-	365	449	IPR042197	-
	Aip05g03980	1052	Pfam	TIR domain	21	192	IPR000157	GO:0007165
	Aip05g03980	1052	Gene3D	-	15	193	IPR035897	-
	Aip05g03980	1052	PRINTS	Disease resistance protein signature	226	241	-	-
	Aip05g03980	1052	PRINTS	Disease resistance protein signature	304	318	-	-
	Aip05g03980	1052	PRINTS	Disease resistance protein signature	400	414	-	-
	Aip05g03980	1052	PRINTS	Disease resistance protein signature	706	722	-	-
	Aip05g03980	1052	SUPERFAMILY	"Winged helix" DNA-binding domain	435	543	IPR036390	-
	Aip05g03980	1052	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	22	715	-	-
	Aip05g03980	1052	Gene3D	Ribonuclease Inhibitor	545	808	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip05g03980	Aip-Chr5	148095095	148099082	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip05g03980	15	785	WRKY Transcription Factor Family	AT4G12020	33.753	1.65e-98	341

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip05g03980	-		-	ahf:112802989	1861.66