Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03979 ATGTCCTTCCGGAGTATTGTTCGTGATGTGAGGGATGGGTTTGGAAGCTTATCAAGACGGAGTTTTGATGTAAGGCTTTCCGGCCATCACAGGGGCAAGTCACATAGTTTGGTCCATGAGTTGCAGGATCAACTGCCGGTAATACAGAACAGCCAGTGGGCTAGTCTTCCGCCTGAGCTTCTCCGTGAGGTTGTTAAAAGATTGGAAGCAGATGAGAGTACATGGCCTGCTCGTAAGCATGTGGTTTCGTGTGCCGGTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAGTCATTAACTGTCCTGAGTTCAGTGGGAAGATTACTTTCCCGGTGTCCCTGAAGCAGCCTGGTTCTAGGGATGGACTCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTATCATCTATTCCTTTGTCTTAGTCCTGCACTGCTTGTTGAAAATGGGAAGTTTCTCCTTTCGGCCAAACGTACCCGAAGGACAACTTGCACGGAGTATATTATATCAACAGATGCAGATAACATATCAAGATCTAGTAGCACTTATATTGGAAAATTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATATATGATACACAGCCCCCATGTAGCACTGCCCAGCTTTCGCCACCGGGCAGAAGCCGTAGGTTTAATTCAAAAAAAGTTTCTCCAAAGGTTCCCAGTGGCAGCTATAATATTGCTCGGATCACCTACGAGTTGAATGTCCTTGGTACTAGGGGTCCACGTAGGATGAACTGCACCATGCACACAATTCCTATGTCATCCCTTGAGCCGGGTGGCTGTGTCCCGGGCCAAGCAGAGCTAATTCCCCGTAACCTCGAGGATTCCTTCCGGAGCATCTCCTTCTCATCAAAATCGATTGACCGGTCATCGGAGTTCAGCAGCGCTAGATTCTCCGACATAATTGGGCTAGGTAACGAAGGGGAAGAGGGTAAAGAAAGACCTCTAGTTCTGAAGAACAAGGCACCGAGATGGCACGAACAGCTTCAGTGTTGGTGCCTCAACTTTAGGGGAAGGGTGACAGTCGCCTCCGTCAAGAATTTTCAGCTTATTGCAGCAACACAACCTCCGGCCGGCACTCCTACGCCGTCGCAGCCGACACAATCCTCTGACCATGACAAGATTATTCTTCAGTTTGGGAAAGTTGGTAAGGACATGTTCACCATGGACTATAGATATCCACTTTCTGCATTTCAAGCTTTTGCCATCTGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAG 1281 0.4731 MSFRSIVRDVRDGFGSLSRRSFDVRLSGHHRGKSHSLVHELQDQLPVIQNSQWASLPPELLREVVKRLEADESTWPARKHVVSCAGVCKSWREMCKEVINCPEFSGKITFPVSLKQPGSRDGLIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISTDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPCSTAQLSPPGRSRRFNSKKVSPKVPSGSYNIARITYELNVLGTRGPRRMNCTMHTIPMSSLEPGGCVPGQAELIPRNLEDSFRSISFSSKSIDRSSEFSSARFSDIIGLGNEGEEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAGTPTPSQPTQSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03979 426 SUPERFAMILY Tubby C-terminal domain-like 102 426 IPR025659 -
Aip05g03979 426 Pfam Tub family 114 421 IPR000007 -
Aip05g03979 426 Pfam F-box domain 53 98 IPR001810 GO:0005515
Aip05g03979 426 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Aip05g03979 426 PANTHER TUBBY-RELATED 1 426 - -
Aip05g03979 426 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Aip05g03979 426 ProSitePatterns Tub family signature 2. 411 426 IPR018066 -
Aip05g03979 426 Gene3D Tubby Protein; Chain A 112 420 IPR025659 -
Aip05g03979 426 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Aip05g03979 426 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Aip05g03979 426 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Aip05g03979 426 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Aip05g03979 426 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Aip05g03979 426 PRINTS Tubby superfamily signature 383 402 IPR000007 -
Aip05g03979 426 PRINTS Tubby superfamily signature 404 426 IPR000007 -
Aip05g03979 426 Gene3D - 48 100 - -
Aip05g03979 426 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03979 Aip-Chr5 148080501 148084890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03979 1 426 TUB Transcription Factor Family AT1G76900 68.571 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aip05g03979 Tub 2.8e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03979 K19600 - rcu:8283226 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03979 05 148080501 148084890 Aip09g03275 09 138775798 138778695 PCT