Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03977 ATGGAAGAAGAAGAAGAAGAAGTAGTGAATGCAACAAATTCAAGTGAAGAGAATAATAGTAATAATAAGGGAAGAGAAGAAGAAGAAGGTGGTGGTGGTGGTCGCGACGACGGCGGCGATAAGATGAGCTTTGGTGGAAACCGGTGGCCACGGCAAGAAACTTTGGCTCTCTTAAAGATAAGGTCAGATATGGATTCAGTGTTTCGTGATTCAACTCTCAAAGGTCCACTATGGGAAGAAGTTTCAAGGAAATTAGGAGAAATTGGATACAAGAGAAGTGCAAAGAAATGCAAAGAAAAATTTGAGAATGTGTATAAGTATCACAAGAGAACCAAAGAAGGTAGAACTGGAAAATCTGAAGGAAAAACCTACAAGTTCTTTGATCAATTACAAGCACTTGAGAATCACAATCAATTCAATAATACACACCCTCCTCCAAAATCATCACAACCTCTTTTGCCAACAAACCCTACTTTAGTAAATTCTTCGGCACTGCCGTCAACAACTGTGACTGCAGCAGTCACAACCAACAACATAAGTAGTACTACTTTTGCACCACATTCCTTTCCTAATAACAACAGCATGAACCTTTTTTCATCACCATCGTCGTCACCATCGTCGTCAACAGCTTCAGATGAAGGGTTGGAAGAGAGGTACAAGAAGAAGAGGAAATGGAAGGACTACTTCAGGAAGCTGACTAGGCAAGTCCTTGCAAAGCAAGAGGAGATGCAAAATAGGTTCTNGTTGCAAGAGATGTCAAGAATCGCCAATGAACACGACGTACTTGTGCAAGAGAGGTCAACAGCTGCAGCCAAAGATGCAGCTGTTATCGCTCTTTTGCACAAGTTATCCGGCCACGAAACACAATCACCACAGACACAGACACAGATACAGAAACAACAAACAATTAAGGCAAAGAATAGTAGTAGTAGAGAAATAGTTGAAAGAATGAGTTGTTCTTCGTCTTCAAGGTGGCCAAAGGGTGAAGTTCATGCATTGATAAGGCTAAGAACAAGTCTTGATTCAAAGTACATGGAGAATGGACCAAAAGCTCCATTATGGGAGGATATATCAGGTGGAATGCAGAGATTAGGGTACAACCGAAGTGCGAAGAGATGCAAAGAGAAATGGGAGAATATAAACAAGTACTTCAAGAAAGTGAAGGAGAGTAACAAGCAAAGGCGTGAAGATAGCAAGACTTGTCCCTATTTTCATGAGCTTGAAGCTCTTTACAAAGACAAGATTAGCAACAACACCTCCTTTGGAAGTTTCCAGAATAATATGGAGCCTTTGATGGTTCAGCCTGAGCAACAATGGAGGCCACCACCTGAATCCAACAAGGACAACAATAATGAATCAAATGAAGAAGAAGAAGAAGAAGAGTACGATGATGATGGTGTTGAAGAAGAAGAAGAAGATAGTGTTGGAGAAGAAGAAGAAGGATTGAACCGTTATCAGATTGTGACAAATAAAGTTTCATCAGTGGACACAGTTGAATAA 1500 0.406 MEEEEEEVVNATNSSEENNSNNKGREEEEGGGGGRDDGGDKMSFGGNRWPRQETLALLKIRSDMDSVFRDSTLKGPLWEEVSRKLGEIGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGKTYKFFDQLQALENHNQFNNTHPPPKSSQPLLPTNPTLVNSSALPSTTVTAAVTTNNISSTTFAPHSFPNNNSMNLFSSPSSSPSSSTASDEGLEERYKKKRKWKDYFRKLTRQVLAKQEEMQNRFXLQEMSRIANEHDVLVQERSTAAAKDAAVIALLHKLSGHETQSPQTQTQIQKQQTIKAKNSSSREIVERMSCSSSSRWPKGEVHALIRLRTSLDSKYMENGPKAPLWEDISGGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKDKISNNTSFGSFQNNMEPLMVQPEQQWRPPPESNKDNNNESNEEEEEEEYDDDGVEEEEEDSVGEEEEGLNRYQIVTNKVSSVDTVE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03977 499 MobiDBLite consensus disorder prediction 181 212 - -
Aip05g03977 499 MobiDBLite consensus disorder prediction 20 36 - -
Aip05g03977 499 Pfam Myb/SANT-like DNA-binding domain 47 133 IPR044822 -
Aip05g03977 499 Pfam Myb/SANT-like DNA-binding domain 323 410 IPR044822 -
Aip05g03977 499 ProSiteProfiles Myb-like domain profile. 41 105 IPR001005 -
Aip05g03977 499 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 6 487 - -
Aip05g03977 499 Coils Coil 1 21 - -
Aip05g03977 499 SMART sant 321 383 IPR001005 -
Aip05g03977 499 SMART sant 45 107 IPR001005 -
Aip05g03977 499 ProSiteProfiles Myb-like domain profile. 323 381 IPR001005 -
Aip05g03977 499 MobiDBLite consensus disorder prediction 451 478 - -
Aip05g03977 499 Gene3D - 49 110 - -
Aip05g03977 499 Gene3D - 325 386 - -
Aip05g03977 499 MobiDBLite consensus disorder prediction 418 499 - -
Aip05g03977 499 CDD GT1 323 388 - -
Aip05g03977 499 MobiDBLite consensus disorder prediction 1 53 - -
Aip05g03977 499 MobiDBLite consensus disorder prediction 181 215 - -
Aip05g03977 499 CDD GT1 47 112 - -
Aip05g03977 499 MobiDBLite consensus disorder prediction 133 164 - -
Aip05g03977 499 PANTHER - 6 487 - -
Aip05g03977 499 MobiDBLite consensus disorder prediction 418 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03977 Aip-Chr5 148036959 148039175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03977 39 438 Trihelix Transcription Factor Family AT1G76890 47.609 2.73e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip05g03977 Myb_DNA-bind_4 3.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03977 - - ahf:112802983 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03977 05 148036959 148039175 Aip09g03277 09 138862116 138865466 PCT