Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03976 ATGCTGGGGGACTCAGCTGTTTTGGGAACAGGAGGAGGCAGCTCTGGAGGAGCAGATGCAGTAGTCGCAACAGCCGCTACTTCTTCTGTCGCGGCTGCTGTAGCTACTGCATCAGCACCACTACCACCACCACTACTATCAACAGCACCGCATCATCATCATGACGGTGCTGTTGAAATGGGTGGTGGTGGTGGTGGTGGAGGTGGAGGTGGAGGATCGACCTCCGGGGACGACGAGAAAGGAGAGAGGAGCTTCGGCGGGAACAGGTGGCCGAGACAAGAGACTTTGGCTTTGCTCAAAATACGGTCGGATATGGACGTGGCGTTTCGCGATGCCAGTGTTAAGGGTCCTTTGTGGGAAGAGGTTTCAAGGAAGCTAGCAGAGCTTGGATACAAGAGAAACGCGAAGAAATGCAAAGAGAAATTTGAGAATGTGTACAAGTACCACAAGAGAACGAAAGATGGTAGAAGTGGAAAATCTGAAGGAAAAACATATAGGTTCTTTGATCAATTAGAGGCACTTGAAAACAACCCAATTATTCATTCCCCAGCATTACCTCAAAAATCAGCATTGCAAGCAACACCAGTTTCAATGGTAAAAACAACTGCATCATTGCCATCCCCTCCAATAATTACAACAATGCCACTGCCACAACAACAGTTAGTAGTAGCGAGTAGTGGCACCAACACAACATCAGCACCACCTATTAGTATTGCTACTGTTCCATCAATAGCTCCTGCTACTATTTCAATGCCTCAAATTCAACCCAATAATAGTAATAATAATAATAGTAATAATAATAATAATAATCCTGTATATTTTCCACCACCACCACCACCACCTGCTTCATCTTTTCCGAGTATTCCGGCGGAGCTACTCTCGAATTCGAGTTCTTCTTCGACTTCGTCGGAGGAGACGATCGAAGGAGGGAGTAGGCGGAACAAGAGGAAGAGAAGGTGGAAGGAGTTCTTTGAGAAGCTAATGAAGGAGGTGATAGAGAAGCAGGAGGATCTGCAGAAGAGGTTCCTTGAAGCAATAGAGAAGAGGGAGAAAGAGAGATCCGCTAGAGAAGAAGCATGGAGAGTTCAGGAATTACAAAGAATCAATAAAGAGAGAGAGATTCTCGCTCAAGAGAGGTCCATCGCCGCCGCCAAAGACCAAGCCGTCATGACCTTCTTGCACAAAATTGCCGACCAACAAAACCTTCCTACACCGCCATTCAACAATGTTTCTCAACCATCACCACCGCCACCACCGCCTCCTCCACCACCACCACCGCCACAACAAACACAACCTACGCCGCCGGTGGTGGTGCCGCCATTGCCCACACCGCCACGGCCGCCACCACCACCAAGCATGGAGATGGTGAAAGTTGTTGATAACAACAACAACAACATTGGAGAGAATAACAATAACAATAATAATAATAATTCGTCACCGCTGGCGGCGAGTTCTTCGCGGTGGCCGAAAGCTGAAGTTGAGGCGCTGATAAACCTGAGAACAAGCCTTGATGCGAAGTACCAAGAGAATGGACCAAAAGGACCATTGTGGGAAGAGATTTCAGCGTTGATGAAGAAGCATGGTTATAACAGGAACGCTAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAAGAGAGTAACAAGAAGAGGCCTCAAGATTCAAAGACCTGTCCCTATTTTCACCAGCTTGATGCTCTTTACAGGGAGAGGAATAGCAGCAAGCAAGACGCTGCTCCCGCCATTGTCACTACAACGCCGTTAATGGTAAGGCCGGAGCAGCAGTGGCCTCCTCAAACGGAGCAGCCGTCCTCGCAGCCGCGGGAAGTAACCATGGAAGACGCTCGGAAGGGAGGCAACGAAGAGGATGAGGACGAGGAGAAGGATAATATTGGTGATGAAGATGAAGACGAGGACGATGACGACGACGACGAAGGTGGTAGTAACTTTGAGATTGTGGCAAGCAAGCCAGTTTCTGCTGAGTGA 2004 0.483 MLGDSAVLGTGGGSSGGADAVVATAATSSVAAAVATASAPLPPPLLSTAPHHHHDGAVEMGGGGGGGGGGGGSTSGDDEKGERSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYKRNAKKCKEKFENVYKYHKRTKDGRSGKSEGKTYRFFDQLEALENNPIIHSPALPQKSALQATPVSMVKTTASLPSPPIITTMPLPQQQLVVASSGTNTTSAPPISIATVPSIAPATISMPQIQPNNSNNNNSNNNNNNPVYFPPPPPPPASSFPSIPAELLSNSSSSSTSSEETIEGGSRRNKRKRRWKEFFEKLMKEVIEKQEDLQKRFLEAIEKREKERSAREEAWRVQELQRINKEREILAQERSIAAAKDQAVMTFLHKIADQQNLPTPPFNNVSQPSPPPPPPPPPPPPPQQTQPTPPVVVPPLPTPPRPPPPPSMEMVKVVDNNNNNIGENNNNNNNNNSSPLAASSSRWPKAEVEALINLRTSLDAKYQENGPKGPLWEEISALMKKHGYNRNAKRCKEKWENINKYFKKVKESNKKRPQDSKTCPYFHQLDALYRERNSSKQDAAPAIVTTTPLMVRPEQQWPPQTEQPSSQPREVTMEDARKGGNEEDEDEEKDNIGDEDEDEDDDDDDEGGSNFEIVASKPVSAE 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03976 667 CDD GT1 88 153 - -
Aip05g03976 667 SMART sant 484 546 IPR001005 -
Aip05g03976 667 SMART sant 86 148 IPR001005 -
Aip05g03976 667 MobiDBLite consensus disorder prediction 250 316 - -
Aip05g03976 667 Gene3D - 90 151 - -
Aip05g03976 667 Gene3D - 488 549 - -
Aip05g03976 667 MobiDBLite consensus disorder prediction 271 286 - -
Aip05g03976 667 MobiDBLite consensus disorder prediction 400 486 - -
Aip05g03976 667 ProSiteProfiles Myb-like domain profile. 486 544 IPR001005 -
Aip05g03976 667 MobiDBLite consensus disorder prediction 575 667 - -
Aip05g03976 667 CDD GT1 486 551 - -
Aip05g03976 667 Coils Coil 321 348 - -
Aip05g03976 667 MobiDBLite consensus disorder prediction 457 485 - -
Aip05g03976 667 MobiDBLite consensus disorder prediction 288 307 - -
Aip05g03976 667 MobiDBLite consensus disorder prediction 630 654 - -
Aip05g03976 667 Pfam Myb/SANT-like DNA-binding domain 486 573 IPR044822 -
Aip05g03976 667 Pfam Myb/SANT-like DNA-binding domain 88 174 IPR044822 -
Aip05g03976 667 PANTHER - 37 661 - -
Aip05g03976 667 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 37 661 - -
Aip05g03976 667 MobiDBLite consensus disorder prediction 250 270 - -
Aip05g03976 667 MobiDBLite consensus disorder prediction 43 89 - -
Aip05g03976 667 MobiDBLite consensus disorder prediction 594 615 - -
Aip05g03976 667 MobiDBLite consensus disorder prediction 408 454 - -
Aip05g03976 667 ProSiteProfiles Myb-like domain profile. 88 146 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03976 Aip-Chr5 148018103 148021239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03976 86 601 Trihelix Transcription Factor Family AT1G76890 48.846 8.82e-143 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip05g03976 Myb_DNA-bind_4 4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03976 - - gmx:100804788 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03976 05 148018103 148021239 Aip09g03279 09 138896674 138900277 PCT