Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03954 ATGCATCAGACATCTGGTCCCAGCATGCTTCCCACAATAGATTTGATCCCAACAATGTTTTTCGGTGAAAGGATCTCAACTAGATTTGGTAAAGTTACTTGTGGAGATATTGTGATTATTCGCTCCCCTCAAAACCCTAGGAAGCTTCTGGCTAAACGATTGGTTGGAATGGAGGATGATACTGTTACATACATTTCTAACCCTGATGAGCCTGATAAGCAGGAAACTATTGTGGTTCCAAAGGGTCACGTTTGGATACAGGGTGATAATGCATATAAATCCAATGATTCAAGGAATTTTGGTGCTGTTCCTTATGGACTTATTCAACACAGGCTATTTTGGAGGGTATGGCCAATCAAAGGTTTTGGACCTTTCTGGAAACACTGA 387 0.4109 MHQTSGPSMLPTIDLIPTMFFGERISTRFGKVTCGDIVIIRSPQNPRKLLAKRLVGMEDDTVTYISNPDEPDKQETIVVPKGHVWIQGDNAYKSNDSRNFGAVPYGLIQHRLFWRVWPIKGFGPFWKH 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03954 128 Pfam Signal peptidase, peptidase S26 6 64 IPR019533 GO:0004252|GO:0006465
Aip05g03954 128 Pfam Signal peptidase, peptidase S26 74 117 IPR019533 GO:0004252|GO:0006465
Aip05g03954 128 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 3 127 - -
Aip05g03954 128 Gene3D Umud Fragment, subunit A 1 126 - -
Aip05g03954 128 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 3 127 - -
Aip05g03954 128 ProSitePatterns Signal peptidases I signature 3. 84 97 IPR019758 GO:0004252|GO:0016021
Aip05g03954 128 CDD S26_SPase_I 3 109 IPR019533 GO:0004252|GO:0006465
Aip05g03954 128 SUPERFAMILY LexA/Signal peptidase 3 126 IPR036286 -
Aip05g03954 128 PRINTS Bacterial leader peptidase 1 (S26A) family signature 3 19 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip05g03954 128 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 62 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip05g03954 128 PRINTS Bacterial leader peptidase 1 (S26A) family signature 79 98 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03954 Aip-Chr5 147836095 147844096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03954 9 125 MADS-box Gene Family AT1G29960 52.137 4.31e-42 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03954 K09647 - csin:114265272 176.407