Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03950 ATGCGCCTCCACCGCAGCGACAAATACTCCTCCCCCGCCGGAACCATGAGGTACCGGGGTGTGAGGCGGAGGCCATGGGGACGTTATGCCGCTGAGATAAGGGACCCTCAATCTAAGGAGCGGCGTTGGCTGGGGACATATGACACGGCGGAGGAAGCCGCTTGCGCCTACGACTCCGCTGCCAGAGTCTTGCGTGGCCCCAAGGCGAGAACTAACTTTTTGTACACTACTTCCCCTCCTCAACCTTCTTCCATCTTCCTCACCAACAAAAACAATCATAAAGACATCCTTAACCGCAGTAGCCATCTCTTCTTCAACAGCCGTAACTGCCACTTGGGTGGTTCTTGGCCTGACCCCTTCTCCTCCTACTCCGTCCCTTCTTCATTTTCTACCTTCCAGCAACAGCGAAACCAGCAGCTTAACTCCACAAACATGGTCCTCCCCCGTGACTTCATAGCCCCTTACACCAAACCCAAGGGCAGTTTAGTCAACTCATCACATGCTGGCAATGCTAATAACCCTTCTCTTTCATCTTCCTTATCGTACCCCAAGGGCAGTTTAGTCAACTCATCTTCCATTAGCCACCATTTATCCTACCCCAAGGGCAGTTTAGTCAACTCATCAAATGGTAGCAATGCTCCTAACTACAGCGCAGCCTTTTCTTCCTCTTGCCTGACGAACACAAACAGTCTCGGTTGTGGCAGTGATAATAATTATAAAGCTGATGGCAGTGAATACTCGCAAGAGTTCTTTCATCACTCAGACTCATCATCGGGGTTGTTGGAAGAGATAGTTAGAGGTTTCTTGAAAAGTCCAAAGCCCACTAAAAGCGACACCATGAAGAAAGACCAGGATACGGCGGTTCCCTCTAGCATGCCTTTTACTCAGGAGAACAACAACGTTAACAACAACAATAATAATCATCATCATCATCATCTTGAAGAGTGGCCTAACATGGAAGACATTTTTCATCAGTACCCGGACTTTCTTAATTAG 996 0.4869 MRLHRSDKYSSPAGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTYDTAEEAACAYDSAARVLRGPKARTNFLYTTSPPQPSSIFLTNKNNHKDILNRSSHLFFNSRNCHLGGSWPDPFSSYSVPSSFSTFQQQRNQQLNSTNMVLPRDFIAPYTKPKGSLVNSSHAGNANNPSLSSSLSYPKGSLVNSSSISHHLSYPKGSLVNSSNGSNAPNYSAAFSSSCLTNTNSLGCGSDNNYKADGSEYSQEFFHHSDSSSGLLEEIVRGFLKSPKPTKSDTMKKDQDTAVPSSMPFTQENNNVNNNNNNHHHHHLEEWPNMEDIFHQYPDFLN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03950 331 MobiDBLite consensus disorder prediction 270 294 - -
Aip05g03950 331 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Aip05g03950 331 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Aip05g03950 331 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 10 286 - -
Aip05g03950 331 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 286 - -
Aip05g03950 331 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Aip05g03950 331 CDD AP2 17 73 IPR001471 GO:0003700|GO:0006355
Aip05g03950 331 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Aip05g03950 331 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Aip05g03950 331 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Aip05g03950 331 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03950 Aip-Chr5 147779824 147780927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03950 15 86 AP2-EREBP Transcription Factor Family AT1G12980 77.778 2.63e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip05g03950 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03950 - - aip:107641557 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03950 05 147779824 147780927 Aip05g03950 05 147779824 147780927 ECH