Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip05g03950 | ATGCGCCTCCACCGCAGCGACAAATACTCCTCCCCCGCCGGAACCATGAGGTACCGGGGTGTGAGGCGGAGGCCATGGGGACGTTATGCCGCTGAGATAAGGGACCCTCAATCTAAGGAGCGGCGTTGGCTGGGGACATATGACACGGCGGAGGAAGCCGCTTGCGCCTACGACTCCGCTGCCAGAGTCTTGCGTGGCCCCAAGGCGAGAACTAACTTTTTGTACACTACTTCCCCTCCTCAACCTTCTTCCATCTTCCTCACCAACAAAAACAATCATAAAGACATCCTTAACCGCAGTAGCCATCTCTTCTTCAACAGCCGTAACTGCCACTTGGGTGGTTCTTGGCCTGACCCCTTCTCCTCCTACTCCGTCCCTTCTTCATTTTCTACCTTCCAGCAACAGCGAAACCAGCAGCTTAACTCCACAAACATGGTCCTCCCCCGTGACTTCATAGCCCCTTACACCAAACCCAAGGGCAGTTTAGTCAACTCATCACATGCTGGCAATGCTAATAACCCTTCTCTTTCATCTTCCTTATCGTACCCCAAGGGCAGTTTAGTCAACTCATCTTCCATTAGCCACCATTTATCCTACCCCAAGGGCAGTTTAGTCAACTCATCAAATGGTAGCAATGCTCCTAACTACAGCGCAGCCTTTTCTTCCTCTTGCCTGACGAACACAAACAGTCTCGGTTGTGGCAGTGATAATAATTATAAAGCTGATGGCAGTGAATACTCGCAAGAGTTCTTTCATCACTCAGACTCATCATCGGGGTTGTTGGAAGAGATAGTTAGAGGTTTCTTGAAAAGTCCAAAGCCCACTAAAAGCGACACCATGAAGAAAGACCAGGATACGGCGGTTCCCTCTAGCATGCCTTTTACTCAGGAGAACAACAACGTTAACAACAACAATAATAATCATCATCATCATCATCTTGAAGAGTGGCCTAACATGGAAGACATTTTTCATCAGTACCCGGACTTTCTTAATTAG | 996 | 0.4869 | MRLHRSDKYSSPAGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTYDTAEEAACAYDSAARVLRGPKARTNFLYTTSPPQPSSIFLTNKNNHKDILNRSSHLFFNSRNCHLGGSWPDPFSSYSVPSSFSTFQQQRNQQLNSTNMVLPRDFIAPYTKPKGSLVNSSHAGNANNPSLSSSLSYPKGSLVNSSSISHHLSYPKGSLVNSSNGSNAPNYSAAFSSSCLTNTNSLGCGSDNNYKADGSEYSQEFFHHSDSSSGLLEEIVRGFLKSPKPTKSDTMKKDQDTAVPSSMPFTQENNNVNNNNNNHHHHHLEEWPNMEDIFHQYPDFLN | 331 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip05g03950 | 331 | MobiDBLite | consensus disorder prediction | 270 | 294 | - | - | |
Aip05g03950 | 331 | PRINTS | Ethylene responsive element binding protein signature | 40 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Aip05g03950 | 331 | PRINTS | Ethylene responsive element binding protein signature | 18 | 29 | IPR001471 | GO:0003700|GO:0006355 | |
Aip05g03950 | 331 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE | 10 | 286 | - | - | |
Aip05g03950 | 331 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 10 | 286 | - | - | |
Aip05g03950 | 331 | ProSiteProfiles | AP2/ERF domain profile. | 17 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Aip05g03950 | 331 | CDD | AP2 | 17 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Aip05g03950 | 331 | SMART | rav1_2 | 17 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Aip05g03950 | 331 | Pfam | AP2 domain | 17 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Aip05g03950 | 331 | SUPERFAMILY | DNA-binding domain | 17 | 75 | IPR016177 | GO:0003677 | |
Aip05g03950 | 331 | Gene3D | AP2/ERF domain | 16 | 75 | IPR036955 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip05g03950 | Aip-Chr5 | 147779824 | 147780927 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip05g03950 | 15 | 86 | AP2-EREBP Transcription Factor Family | AT1G12980 | 77.778 | 2.63e-33 | 124 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Aip05g03950 | AP2 | 6e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip05g03950 | - | - | aip:107641557 | 612.068 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aip05g03950 | 05 | 147779824 | 147780927 | Aip05g03950 | 05 | 147779824 | 147780927 | ECH |