Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03949 ATGGACCAAGCACTGAGCCGTCTCAACGGCATGCCACCCCTTTCCGAACCACCTCCCAACAACCCCAGAACCAAGCAGACCTCCCGAGACACCAGCACTGCCCCCACTGCCGGACCCATGAGGTACCGCGGCGTCAGGCGGAGGCCATGGGGCCGTTATGCCGCCGAGATAAGGGACCCGCAGTCCAAGGAGCGCCGTTGGCTGGGGACTTTCGACACTGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCCGAGCCATGCGTGGCCATAAGGCAACAACCAACTTCGTGTACCATACTTTACCTTCTTACCCTTCTTCCATCACCATCACCAACAACCATAGCAATCTCCTTAACTGCCATAACCACTTCAGCTTCCCTTGTCATCATAACCAACTCTTCAACGGCCATAAACGCCACTTCGGGGTTTGGTCTGACCCTTTCTCTGCTTCAACCTTTCAGGAACAGCGAAACCTTGACTCCATCAACATGCTTCTCCACCGAGACTTAGTAGCCTCTTCTTCCTCCGACAATTTATCCTACAACACGGGCAGTTTTGTCAATTCACATCCTGACACGAGCAATCTCGGTTGTGGCGGTGGAAGCAATAAGACCGATAATACTAACAATAATGAAGCTGACGGTGGTGGTGAAGAAGACTCAAAGGAGCAATTCTATGAAGGTTCAGGGTCGTCAGGGTTGTTGGAAGAAATAGTTAAGGGTTTCTTGAAGAAAAAGCCAAAGCTCAACAAATGTGAGAGATTGTTAGGTACCAGGACCACTGCTTCAGACGGTTCTTGCCACTCACCATTTCCTCTTCGTCCTCTTCCTCTGGTTGTTTTCCCCGAGGAGTCGAAGAAAGACGAGGGTTTCGGCGTTCATTCAGATCAACAGGGTTTCCAATACATGCAGCAGCTTGGTGGCGGTTTCAATAATAATGGCTTTAGCAATATGGTTATGCTGCCTAACATGATGATGAATAACGATAATAATCATGCAGAAGTAGAGTGCTCTATCGTAGAAAACCTTTTTCGGGATGCATAA 1047 0.5033 MDQALSRLNGMPPLSEPPPNNPRTKQTSRDTSTAPTAGPMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGHKATTNFVYHTLPSYPSSITITNNHSNLLNCHNHFSFPCHHNQLFNGHKRHFGVWSDPFSASTFQEQRNLDSINMLLHRDLVASSSSDNLSYNTGSFVNSHPDTSNLGCGGGSNKTDNTNNNEADGGGEEDSKEQFYEGSGSSGLLEEIVKGFLKKKPKLNKCERLLGTRTTASDGSCHSPFPLRPLPLVVFPEESKKDEGFGVHSDQQGFQYMQQLGGGFNNNGFSNMVMLPNMMMNNDNNHAEVECSIVENLFRDA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03949 348 MobiDBLite consensus disorder prediction 21 35 - -
Aip05g03949 348 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 189 - -
Aip05g03949 348 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Aip05g03949 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 35 189 - -
Aip05g03949 348 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Aip05g03949 348 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Aip05g03949 348 MobiDBLite consensus disorder prediction 1 45 - -
Aip05g03949 348 MobiDBLite consensus disorder prediction 193 215 - -
Aip05g03949 348 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Aip05g03949 348 CDD AP2 41 97 IPR001471 GO:0003700|GO:0006355
Aip05g03949 348 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Aip05g03949 348 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Aip05g03949 348 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Aip05g03949 348 MobiDBLite consensus disorder prediction 193 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03949 Aip-Chr5 147752147 147753193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03949 40 246 AP2-EREBP Transcription Factor Family AT1G24590 42.593 1.77e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g03949 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03949 - - aip:107641556 668.307