Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03947 ATGGCAAAGGTAAGGGATAAGCTATACGTCACTGTTCCGAGTTTATTCCGATGCCCAATTTCGATGGATGTGATGAGGTCTCCCGTAAGCTTATGCACCGGCGTCACATACGATCGGTCCAGCATCCAGCGCTGGCTCGAATCTGGTCATGACACGTGTCCTGCCACCATGCAGATCCTCCCTTCCAAGGACTTCATCCCAAACCTTACACTCCACCGCCTCATCCGCCTTTGGCTCCTCTCCGCTGCCGGAGAACCTTCATCGCCATCCGAGACACGGATATCCGCCGCAAGCGACCGCCTCCGCGCTCTCCTCGCCGGAATTCAAACCGACGCAGAGGATTTTGCCGCTTCGCTCTCTGAGCTCGCCGAATTTTCAAGATTTTCCGCCGAAAACCGCCGTGTCCTGGTGAGCTTCCCCGGATTCGATTCCGCCATCACTCGCGCCCTCGCCGGAAGCAGGTCGCGGATTGAAGCTTCGGAAAACGTGATCGCGGTTCTGGATTTGGTTCTCAGGGAGAACGGGAGTTCCGATTCCGGTGTCCTAGAGAGGATCCGACGGTCTATACTCGATTGTCGCGAAGATTGCTTAGCAGCGATCGCTTTTGCTCTTGAGAATGGATCTGCGAAATCGAAGGTCGCATCGGTTAGAGTTTTGGAATTTCTCGCCGGCGATTTTCAATCCAAGCGGTGGATCGCAGAAACGCGAGGCTTATTGTCACAGCTCGTAAAGCTTCTGTACGACGGAACTGAGGAGCTAAACGGCGCCGTTTTGTCGCTTTTGGCTTCGGTTTCGGTGACTCAGTCTGCGAAAGCCGAGCTTGTTCGTTCCGAAATCGTCAAGGCCTTGTCGAAGACGCTGCAGAGCGCCGCCTCCAGCGGTTCCATGGCGGAGAAGTGCCTGAAAATGCTGGCGGTGGTGGCGACGTGCGCTGATGGCAGGGCAGCGATGGGCGGAGATCTTTCATGCGCTGCGGGAGTGGTGGAGAGACTGGCAAAGGCAGGGAAGGCGGCGACGGAGGACGCGGTGGCGGTGCTGTGGAGCCTGTGCTGCCTTTGCGGTAACGAAAAGGTGAGGGATGAGGTGGCGAAGCGAAACGGCGTCGCAGTGGTGCTTTTGGTTATGCAGAGAGGATGTGAGGGTCACGTGAGGAGCATGTGCGTGGATTTGATTAAGGTTCTGAGGAAAAACGGGTTGCCATTACCACTAAAATTAAGCTATGACACTCAAACTACTCATATTAAACCTTGCTAA 1254 0.5534 MAKVRDKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQRWLESGHDTCPATMQILPSKDFIPNLTLHRLIRLWLLSAAGEPSSPSETRISAASDRLRALLAGIQTDAEDFAASLSELAEFSRFSAENRRVLVSFPGFDSAITRALAGSRSRIEASENVIAVLDLVLRENGSSDSGVLERIRRSILDCREDCLAAIAFALENGSAKSKVASVRVLEFLAGDFQSKRWIAETRGLLSQLVKLLYDGTEELNGAVLSLLASVSVTQSAKAELVRSEIVKALSKTLQSAASSGSMAEKCLKMLAVVATCADGRAAMGGDLSCAAGVVERLAKAGKAATEDAVAVLWSLCCLCGNEKVRDEVAKRNGVAVVLLVMQRGCEGHVRSMCVDLIKVLRKNGLPLPLKLSYDTQTTHIKPC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03947 417 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 417 - -
Aip05g03947 417 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Aip05g03947 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 83 IPR013083 -
Aip05g03947 417 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Aip05g03947 417 PANTHER WDSAM1 PROTEIN 6 417 IPR045185 GO:0061630
Aip05g03947 417 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Aip05g03947 417 CDD RING-Ubox_PUB 16 58 IPR045210 -
Aip05g03947 417 SUPERFAMILY ARM repeat 192 396 IPR016024 -
Aip05g03947 417 SUPERFAMILY RING/U-box 8 80 - -
Aip05g03947 417 Gene3D - 103 415 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03947 Aip-Chr5 147725083 147726592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03947 6 416 U-box Gene Family AT5G09800 39.907 5.56e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03947 - - adu:107491069 761.911