Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03945 ATGGTGGTTGTGGAGGAGAGAGAAGAAGAAGAGGTTGGAGTTGTTGTTGATGATGAACGGAGCTCCGGCGAGCGATCGGAGAGGGTGGCATTGGTTGCTTTGAAAAGGGGTTCTCAATTACTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCAACTTTAATCTGGATTTCTAGTAGTGAAGAAAGACGTCTGAAGCTGTCTTCTGTCTCAAGAATTATTCCTGGGCAAAGAACTGCTGTTTTTCAACGTTACCTGCGTCCTGTGAAGGACTATTTATCTTTTTCACTAATTTATAATAACGGAAAGCGGTCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAGGCGTGGATTGCTGGTCTTAAAGCACTGATAACTTCTGGTCGAGGTGGTCGATCCAAAATTGATGGATGGAGTGATGGTGGCCTCAATTTTGATGATAGTAGAGATCTGACATCAAATAGTGCAAGTGAAAGTTCAGCGAGTACTTCCCTAGACATCAGTTCTCCTGACATTCCTGTGAGTCTTCTGAACACTTCACCAAAGACATTCCGACCTGACAATACCCTGAATTCTGAGAAATCACATGCACCATCAGACCCAATAAATATGCAAGTAAAAGGATCTAGTTCAGATACTTTTCGTGTTAGTGTTTCAAGTGCTCCTAGCACATCCAGTCATGGATCTGCACCAGATGACTATGAAGCTCTAGGGGATGTATACATATGGGGTGAGGTTATCTGTGAAAACGTTGTGAAAGTTGGTGCTGATAAAAGTATCAATTATTTCAGCCCGAGAGCAGATGTGCTTCTACCAAGACCACTTGAATCCAATGTAGTTTTAGATGTGCATCATATAGCATGTGGCGTTAGACATGCTTCTCTAGTCACCAGACAAGGTGAAGTTTTTACATGGGGAGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGAACGTGGTTCAACCTCGCCTTGTCGAAGCGTTAGCTTCTACAACCATTGATTTTGTTGCCTGTGGAGAGTTCCATTCTTGTGCTGTAACAATGGCCGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGGATTGCTGGTCCATTAGAGGGACTTCAAGTTGCTTTCGTCGCTTGTGGTCCATGGCACACGGCCTTGATAACTTCTACTGGGCAACTCTTTACGTTTGGTGATGGAACATTCGGTGTGTTGGGCCATGGAGACAGGGAAAATGTTTCATATCCTAGAGAAGTAGACTCCTTATCAGGGTTGAGGACCATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCAGTTGTAGAGGTTATTGTGACACAATCCAGTTCGAGTATATCATCTGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGACATGGGGATAAGGAGGCACGACTTAAACCAACTTGTGTTTCTGCGCTTATCGACTACAATTTTCATAAAATTGCATGCGGGCACAGTTTGACTGTGGGTCTGACAACATCTGGACGTGTTTTTACGATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGGAAGCTTCCATGCTTGGTCGAAGACAAGATTTCCGTGGAATCGATTGATGAAATTGCATGTGGTGCATATCATGTTGCCGTTTTAACATCAAAAAATGAAGTTTTTACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTCGAAGATCGAAAAATACCTACTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCCGCTGCCATATGCCTTCATAAGTGGGTATCCGGTGCCGAGCAGTCTCAATGCTCGGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGACTTGTACATTGCCATTCATGCAGCTCACGGAAAGCATTAAGGGCGGCCTTGGCTCCAAATCCCGGCAAGCCTTATCGAGTTTGTGATTCTTGTTTTGCAAAACTGAACAAGGTTGCAGAAGCTAGCAACAGTAACCGGAGAAATACTCTGCCTCGTCTGTCAGGTGAAAACAAAGACAGGTTGGAAAAATCAGACCTGAAATTGTCAAAAGCACTGGTTCCTTCCAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGGAAGAAAGCAGATACGTTCTCGCTTGTTCGCACCTCACAAGCACCTTCATTGCTACAGTTGAAAGATGTTGTCTTGGCAACTGCTGTTGATCTGAAGCGTACAGCTCCTAGACCGGTGGTTGCACCTTCTGGAGTAAGTTCCAGGTCTGTGTCACCTTTCTCTAGAAGACCAAGCCCCCCTCGATCGGCTACACCTATTCCAACAACATCGGGACTTTCCTTCTCCAAGAGCATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAGGAAGTGCAAAAGTTACGTTCTCAGGTTGAAAGCCTGAAACAGAGATGTGAATTGCAAGAATTAGAGCTTCAGCGGTCAAACAAAAAGACTCAAGATGCTATGGCAATGGCTGCTGAGGAATCTGCTAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACGGCACAGCTCAAAGGTTTTGCTGAGAAGCTCCCACCTGGAGCTTACGATGCCGAGAACATCAAACCGGCTTACCTACCAAACAGTATTGAGCCAAATGGTATCCACCTTCCAGATTCAAATGGTGGGCACCACTCGAGGGCCGAATCAATCAGTGGCTCTAGTTTGGCCTCTACAGCATTCGAATCCTCTCTGCTCAATAGAACTGTGGGGAACTTTCCAGGAACCTATGGATCTACTCTGGACCAGCAAAACCGAGCCAGTGTGACGTCCAATGGTTCAGACAACTATCCAGATGCTAGATTGTCAAATGGTGGCGGCAGCATGTCTGATACTGTTGACGGGAGGGATTCGGGGAATTTCCATGATGACGAGAGTGGTTTAAGATCAAGGAATGCAGGACTGTCTACTAATAGCAATCAGATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTTGTTGCGCTGCGCGACGGAACAAGAGATTTGAAGCGAGTTCGTTTCAGCCGGAGAAGATTCGGAGAGCATCAAGCAGAGACTTGGTGGTCAGAGAACCGGGACAAGGTATACGAAAGGTACAATGTTCGTAGCGCAGACAAGTCTTCCAACCAACCGGGGGCGCCACATAGGACAGAAGGATTGGAAATGAGTCGAGCTGTTCGACATGAGCTCATGGCTTGGCTAGCATTAGGCGCGACTCAGCCCGTAATCGTCGTTGCCTTCCCTCGTCGCAACCTGAACGTCGCCTCCTCCAGCCTGCTCTTCGTCGCCGCCTCCACCCCGGTCTTTTTCGCAGCTTCCAGTCCGCTGAACAACAATGTTTATTCTTCATCTTCTTCCTCCACCTCACCCAAAGGAGCGGAAGCTGCACTTTACAGGGAGCTATGGCATGCGTGTGTAGATCCTCTTGTTACAGTTCCAAGAGAAGGAGAAAGAGTTTTCTATTTCCCTCAGGGACACATAGAACAGTGGCATATGAAATTAGGAGGAGGCATCAACAAATCAGGTGGCTGA 3738 0.4559 MVVVEEREEEEVGVVVDDERSSGERSERVALVALKRGSQLLKYGRKGKPKFCPFRLSNDESTLIWISSSEERRLKLSSVSRIIPGQRTAVFQRYLRPVKDYLSFSLIYNNGKRSLDLICKDKVEAEAWIAGLKALITSGRGGRSKIDGWSDGGLNFDDSRDLTSNSASESSASTSLDISSPDIPVSLLNTSPKTFRPDNTLNSEKSHAPSDPINMQVKGSSSDTFRVSVSSAPSTSSHGSAPDDYEALGDVYIWGEVICENVVKVGADKSINYFSPRADVLLPRPLESNVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALASTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVDSLSGLRTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGHGDKEARLKPTCVSALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKISVESIDEIACGAYHVAVLTSKNEVFTWGKGANGRLGHGDVEDRKIPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFAKLNKVAEASNSNRRNTLPRLSGENKDRLEKSDLKLSKALVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVLATAVDLKRTAPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLRSQVESLKQRCELQELELQRSNKKTQDAMAMAAEESAKCKAAKEVIKSLTAQLKGFAEKLPPGAYDAENIKPAYLPNSIEPNGIHLPDSNGGHHSRAESISGSSLASTAFESSLLNRTVGNFPGTYGSTLDQQNRASVTSNGSDNYPDARLSNGGGSMSDTVDGRDSGNFHDDESGLRSRNAGLSTNSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKSSNQPGAPHRTEGLEMSRAVRHELMAWLALGATQPVIVVAFPRRNLNVASSSLLFVAASTPVFFAASSPLNNNVYSSSSSSTSPKGAEAALYRELWHACVDPLVTVPREGERVFYFPQGHIEQWHMKLGGGINKSGG 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03945 1245 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 311 362 IPR000408 -
Aip05g03945 1245 Coils Coil 886 906 - -
Aip05g03945 1245 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 404 414 IPR000408 -
Aip05g03945 1245 MobiDBLite consensus disorder prediction 979 1038 - -
Aip05g03945 1245 CDD FYVE_like_SF 646 699 - -
Aip05g03945 1245 CDD PH_PLC_plant-like 30 137 - -
Aip05g03945 1245 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 28 1109 - -
Aip05g03945 1245 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 481 532 IPR000408 -
Aip05g03945 1245 MobiDBLite consensus disorder prediction 979 1018 - -
Aip05g03945 1245 MobiDBLite consensus disorder prediction 796 830 - -
Aip05g03945 1245 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 585 636 IPR000408 -
Aip05g03945 1245 Coils Coil 837 878 - -
Aip05g03945 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 710 IPR013083 -
Aip05g03945 1245 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 533 584 IPR000408 -
Aip05g03945 1245 Gene3D - 469 647 IPR009091 -
Aip05g03945 1245 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 418 469 IPR000408 -
Aip05g03945 1245 Pfam Pleckstrin homology domain 34 136 IPR001849 -
Aip05g03945 1245 Gene3D - 202 468 IPR009091 -
Aip05g03945 1245 SUPERFAMILY RCC1/BLIP-II 249 638 IPR009091 -
Aip05g03945 1245 Pfam Regulator of chromosome condensation (RCC1) repeat 480 527 IPR000408 -
Aip05g03945 1245 Pfam Regulator of chromosome condensation (RCC1) repeat 532 581 IPR000408 -
Aip05g03945 1245 Pfam Regulator of chromosome condensation (RCC1) repeat 363 414 IPR000408 -
Aip05g03945 1245 Pfam Regulator of chromosome condensation (RCC1) repeat 311 359 IPR000408 -
Aip05g03945 1245 Pfam Regulator of chromosome condensation (RCC1) repeat 586 633 IPR000408 -
Aip05g03945 1245 Pfam Regulator of chromosome condensation (RCC1) repeat 418 466 IPR000408 -
Aip05g03945 1245 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 28 1109 - -
Aip05g03945 1245 Pfam Transcription factor BRX N-terminal domain 888 923 IPR027988 -
Aip05g03945 1245 Gene3D - 26 141 IPR011993 -
Aip05g03945 1245 Pfam Transcription factor regulating root and shoot growth via Pin3 1046 1101 IPR013591 -
Aip05g03945 1245 Pfam FYVE zinc finger 637 703 IPR000306 GO:0046872
Aip05g03945 1245 PRINTS Chromosome condensation regulator RCC1 signature 404 420 IPR000408 -
Aip05g03945 1245 PRINTS Chromosome condensation regulator RCC1 signature 420 434 IPR000408 -
Aip05g03945 1245 PRINTS Chromosome condensation regulator RCC1 signature 363 379 IPR000408 -
Aip05g03945 1245 PRINTS Chromosome condensation regulator RCC1 signature 580 601 IPR000408 -
Aip05g03945 1245 PRINTS Chromosome condensation regulator RCC1 signature 313 329 IPR000408 -
Aip05g03945 1245 PRINTS Chromosome condensation regulator RCC1 signature 522 540 IPR000408 -
Aip05g03945 1245 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 641 703 IPR017455 -
Aip05g03945 1245 MobiDBLite consensus disorder prediction 935 954 - -
Aip05g03945 1245 ProSiteProfiles BRX domain profile. 1047 1102 IPR013591 -
Aip05g03945 1245 SUPERFAMILY FYVE/PHD zinc finger 637 714 IPR011011 -
Aip05g03945 1245 MobiDBLite consensus disorder prediction 183 219 - -
Aip05g03945 1245 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 417 IPR000408 -
Aip05g03945 1245 SMART fyve_4 635 704 IPR000306 GO:0046872
Aip05g03945 1245 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 456 466 IPR000408 -
Aip05g03945 1245 SUPERFAMILY PH domain-like 31 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03945 Aip-Chr5 147678750 147691278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03945 1048 1112 Major Intrinsic Protein MIP AT1G31880 50.769 1.60e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03945 - - adu:107490830 2100.86