Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03897 ATGGATCCAAATGGTTGCATTGATGATAAGTGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTCTGCTCAGAATGTTTTCTCCCTTTGGAAAGATTGTTTCTGAGGACTTCTTGTGGCACACTCGTGGCCCGAAACGTGGGGAGCCACGGGGTTTTGCCTTTATCCAGTATAGCACAAATGAGGAAGCGAAATTGGCCAAGGAGAAAATGCATGGGAGGTTAGCTTGTGGCCGGCCGTTGGTTGTTCGCCTTGCAGGTGAGAAGTACATGTTGGAAACAGCCGATAACCCTACGAAAGCAACTGGTGAAGGACACAAGTTGCATCTTACCAGAAGCGGCATGGGACAGACAAGTCGTAGTGCAAAAATAGCCGCAATAAAGAACAAATTGAAATCCTTAGAGGAGGGTTCTAGGACCAAGAAGCAAAAGCAAAATGATGATATCTCTTGA 471 0.4501 MDPNGCIDDKCESRLYIGNLDLRITEAALLRMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTNEEAKLAKEKMHGRLACGRPLVVRLAGEKYMLETADNPTKATGEGHKLHLTRSGMGQTSRSAKIAAIKNKLKSLEEGSRTKKQKQNDDIS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03897 156 CDD RRM_RBM18 14 92 IPR039157 -
Aip05g03897 156 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Aip05g03897 156 MobiDBLite consensus disorder prediction 103 127 - -
Aip05g03897 156 Gene3D - 10 102 IPR012677 -
Aip05g03897 156 SMART rrm1_1 14 90 IPR000504 GO:0003723
Aip05g03897 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Aip05g03897 156 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 152 - -
Aip05g03897 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Aip05g03897 156 PANTHER RNA-BINDING PROTEIN 18-RELATED 8 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03897 Aip-Chr5 147170464 147171560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03897 13 95 Eukaryotic Initiation Factors Gene Family AT3G16380 38.554 3.90e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03897 K24527 - gmx:100804800 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03897 05 147170464 147171560 Aip05g03897 05 147170464 147171560 ECH