Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03890 ATGTCATCGCCGGGCTTCACCGGCGGTGGGGCATCAGATTTCTTCACCGGAGCAGTCCGATCCAGCACCATGAACACGAACCCCAGCGCCTCCGCCGTGGCAGCCAACAACCACCGGCACCTCCACCCTTCCCACCCCCTGTACCGAACCCAACAGCAGCTGCCCGCACTGTTTCTAGATCCTTCCTCACAGATCACGCCTCGCCACCAAACACCAACAACACAACCACCACCAACAACCCTCATCGGTAAACGCACCCTCGCCGAATTTCAAACCCAACAACAACATAACCACCTCCTTAACAACCACAACCACAACAGCAATAACAACCATGTCCTCTCTAACCTCCTACTCCGCTCCGTTAAGCCAAGGACGGCGTCGTTTCACACAGGTTCCCCTTTGTCCCCTTTATCGCCCATAGACTTCTCAATCCCTGAATTGCAAATCCCTTCCTCAACTCATCATGCCTTCCAAACGCAGCGTTTTGGCATGCCTCTCTTCAACCAGCTTCGCCCTAACCCCATTCACTCCAACAGCCTCCCCTTGCCTCCTCCCAACTCCAATAATCATTTCCCCTACCGATGCTCCAATTTGAGTGGTTCCGTTTCCAACCGGGTCCAGCTCCCGCTCCCGGCCGAACCGGACAACAAGATTAATACGATGGACCACAGGCTTCTGGAATTGGAGAAGCAGCTTCTAGAAGACGAAGAAGAAGAAGCTGAAGCCGATGCGGCTTCTGTGATCACAACTAGCGCGTGGTCAGAGACCATTCAGAATCTCATGGGAAACGGGTCCACACCCAAACCAGCTTCTTCGTCCCCTACATCCTCAACAACGTCTTCAACTTCGTCTTCTTCCTCCGTGGCTTCCCCTGCCATAGGGTGCTGGAAGCAGACGCTAATGGAGGCCGCATCTGCCATAGCCGAAGGTAAACAAGATTCTGCCACTGAGATCCTGGCCAGGTTGAGTCAAGTTTCCAACCCGAATGGAAATTCGGATCAAAGGTTGATGGATTGCATGGTTTCGGCGCTCAAATCGAGGGTAAACCCGCTGGAGAATCCTCCTCCCGTGGCCGAGTTGTTCAGCAACGAACACGCCGAGTCGACTCAGTTGATGTTTGAAAACTCGCTCTGTTTCATGGTAGGGTTCATGGCAGCCAACTTCGCAATCCTCGAAGCTGCATTTGAGAACAAAACGGAGCTGAAGAGGTTCTGCGTGGTTGATTTCGATATAGGCCACGGGAAACAGTACGTGAGCCTTCTACTCGCGCTCTCCGCGCGTGGAAGAACCCCGCCGGCCATGGTAAGGATCGTGGCGGTGGCGGACACCGGCGGCCAAGAAGAGAGATTAAAATCTGTGGGCGAAATGCTAGCAAGACAGGCAGAGAGGTTTAGGATCGGATTCGAGTTCAAAATCGTTCAGGTCACTCAGCGATTCTCCGAGTTGACCCGCGAGTCGCTTGGATGCGACGCGGATGAGTTTCTAGCTGTGAACTTCGCTTTCAAATTGAACCGAATCCCGGACGAGAGCGTGTCCACGGAGAATCCACGCGACGAGCTCTTGAGGCGCGTGAAGTCACTCTCGCCGCGCGTGGTTACAATCATCGAACAGGAAATAAACGCGAACACGGCGCCGTTTCTGGCGCGCGTGGCCGATTCGTGTTCGTATTACGGCGCGCTCTTCGACTCAGTTGAGTCCTCACTCGGCAAGGACAACAATGGTAACTCCGAGCGAGTCAAGGTGGAGGAAGGACTGAGTCGAAGGGTTTGCAACTCGTTGGCGTGTGAAGGCAGAGACCGCGTGGAGCGTTACGAAGTTTTCGGAAAATGGCGGGCACGCATGGGAATGGCGGGGTTCAAGTCCAAGCCACTGAGTCAGAACGTGGCCGAGTCGATCAAGTCACGACTCGCCCAGAGCAACAATTGTAACACCCGAGTCAACTCGGGACTCACCGTTAAAGAAGAGAACGGTGGGATTTGCTTTGGATGGATGGGGAAAACTCTCACCGTCGCTTCTGCTTGGCTCTAA 2028 0.5429 MSSPGFTGGGASDFFTGAVRSSTMNTNPSASAVAANNHRHLHPSHPLYRTQQQLPALFLDPSSQITPRHQTPTTQPPPTTLIGKRTLAEFQTQQQHNHLLNNHNHNSNNNHVLSNLLLRSVKPRTASFHTGSPLSPLSPIDFSIPELQIPSSTHHAFQTQRFGMPLFNQLRPNPIHSNSLPLPPPNSNNHFPYRCSNLSGSVSNRVQLPLPAEPDNKINTMDHRLLELEKQLLEDEEEEAEADAASVITTSAWSETIQNLMGNGSTPKPASSSPTSSTTSSTSSSSSVASPAIGCWKQTLMEAASAIAEGKQDSATEILARLSQVSNPNGNSDQRLMDCMVSALKSRVNPLENPPPVAELFSNEHAESTQLMFENSLCFMVGFMAANFAILEAAFENKTELKRFCVVDFDIGHGKQYVSLLLALSARGRTPPAMVRIVAVADTGGQEERLKSVGEMLARQAERFRIGFEFKIVQVTQRFSELTRESLGCDADEFLAVNFAFKLNRIPDESVSTENPRDELLRRVKSLSPRVVTIIEQEINANTAPFLARVADSCSYYGALFDSVESSLGKDNNGNSERVKVEEGLSRRVCNSLACEGRDRVERYEVFGKWRARMGMAGFKSKPLSQNVAESIKSRLAQSNNCNTRVNSGLTVKEENGGICFGWMGKTLTVASAWL 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03890 675 MobiDBLite consensus disorder prediction 175 195 - -
Aip05g03890 675 Pfam GRAS domain family 297 674 IPR005202 -
Aip05g03890 675 ProSiteProfiles GRAS family profile. 287 675 IPR005202 -
Aip05g03890 675 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 76 674 IPR005202 -
Aip05g03890 675 Coils Coil 218 245 - -
Aip05g03890 675 MobiDBLite consensus disorder prediction 259 289 - -
Aip05g03890 675 PANTHER SCARECROW-LIKE PROTEIN 8 76 674 IPR030013 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03890 Aip-Chr5 147089897 147092383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03890 44 674 GRAS Transcription Factor Family AT5G52510 45.802 1.11e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip05g03890 GRAS 3e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03890 - - aip:107644872 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03890 05 147089897 147092383 Aip05g03890 05 147089897 147092383 ECH