Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03872 ATGGCAGTTTCTGCAAAAGAAAAAGCAAAAGCAAAAGCGAAGGGCTATGATGGGAGTATGGAAGTGGTGAAAACGGAAGATAGAATAGATACAATAATCAGACAAGCGATTGGCAGGGAACCTTTTTTCACTTTTCCAAGGGCCACTGACACCCCTGTTCAGTGGATTCAGTTACTTCATGCCTTGGATCAGCAGGGTGTTAGCAATTCTTTTCCAGAACTTCCAGGGTGGCCATTGCTCTATCCTGTAAAGGTTCAGTTGCAGAAGTGTGACAAATGTTCTCGAGAGTTTTGCTCCACCATTAATTATAGAAGACATATACGTGCACACCATCGATTGAAAAAGCTTGATAAGGATTCTACAAAAAATAGGGACCTTTTAGGAGCATATTGGGATAAGCTCTCTATAGAAGAGGCAAAGGAAGTTGTATCGTTTGAGAATGTGATGCTGGAGGAAGTTCCAGCATCTTCAATTTTAGAAGCTCTGACAGCCCTTCTACAAAAGCCAGGATTTTCTTCATTACCACAGTATTATCTGAGGGCTGGTGCTGCCCTTTTGGATATTGTTCACTCTCAGTCTTCCTGCTTTCCCTTATCTTCCCAGGAGTTGTTCACTATCCTTGATGATGCTAGTGAAAAAACATGTTTATGTGGGACTGCAGTGTCAATGCAAAGATATATTTTTGATGGAGAGGCTGGAAAAATTGGTCTTGAACCAAGAAATTTAGTTGCTTGCACATGTTTCTTGCTAGAACAGAAGTTGGTGAAGGCATGGCTTGCTGACAAGGATGCTGAAGCCTTGAGGTGCCACAGGCAGCTGGTGGAGGAGGAAGAAGCTGCTCAAAAAAGACAAGCTGAGATATTGGAGAGGAGACGCCAGAAGAAGCTTAGACAAAAAGACCAGAAGGCAAGGGAACAAAGGCATGAGGCAGAAATTGAAGAGCACATTGGGAGCGCAGAAGATGATTTATCAGCAGCAGAAGCATCTTTGGCTACTTATGATTCTGAAGCACATAATCTGGAAACATTCATAGATAGCGCTCCTTCATATGATCCTTTTCAATGCCCTGACACAAATGTAGGACTAGATGGCGTTCAATCTAGTTACAATCTTGGCAGTGATCAGTATATTGAAAGACGGTCGGCACGTCGACCCAATCGTAGACTCACAGCAGTTTCCAGACAGAAGGGTCCGCAAAAATCACAATGGGCTGTAGCGAATGATTCTCATACAAGCCAGAACTCAACACTTTCAAAGATTGAAGTCATTCAGAAATATGGAACCCATCGTGATCATAGGGTAGCTACAGTAGCTAATGGTTGTAGAGTTTGGAGTCCAAAGTCAAAACCAGAAATTGATAGGATGGTTCCAGAAGCTAGAGTAGATAAAGAACCAGACCAAGATAAGGATCATGAAGTTTTGATAGGATCTATATCAATTACTCTAGGGAATTGCAGCCAATCAGAGCGTAATGCAGTGGCATCTCGAGCAGACTGCAATGTTGACAATCTGGCCAACCAGAATAGTTCTCAGAATAAGCCATTGAATCCTGATTTTTTCCAGAATAGCAACAATATGGCCACTAAGCTTTGGAGGCCAGTTAGCCGGCACGAAACTAAAAATCCACTTCCAGTTCAAAGTGGTGAGACAGAAGTGAGTACAATTCATGAAAATGGAGATTGTCAGAACCAGTCAGATCCAAGTTGTTTAAGGTCGTGCAGTACAGACGGTAGTGATGTCGGTTTCGAGATTAATGTTTCCAATACAGAGGGGATAATGGATCCAGGAAGCTTACAGTTATTATCCAGCCATGCCGCAAAAGTTTTTCTTGAACAAAGATGGAAAGAAGCTATGTCATCAAATCATCTGCAATTGATTGTTTCCGACTATGAACCTCCTGGATGCCAGGAAATACAGGATTCTAGAATGGCAGTATGTCAATCTTCTGAGGTTAGAGTTAAGCGGTTAGCCGCAGCCCCGAAGGTTCCTCAATCCAATCACAGAATGAAGCCTGAAAAGGGAACCAAGATAAAATATATTCCCAAACAAAAGACAGCTGCCTAA 2064 0.4239 MAVSAKEKAKAKAKGYDGSMEVVKTEDRIDTIIRQAIGREPFFTFPRATDTPVQWIQLLHALDQQGVSNSFPELPGWPLLYPVKVQLQKCDKCSREFCSTINYRRHIRAHHRLKKLDKDSTKNRDLLGAYWDKLSIEEAKEVVSFENVMLEEVPASSILEALTALLQKPGFSSLPQYYLRAGAALLDIVHSQSSCFPLSSQELFTILDDASEKTCLCGTAVSMQRYIFDGEAGKIGLEPRNLVACTCFLLEQKLVKAWLADKDAEALRCHRQLVEEEEAAQKRQAEILERRRQKKLRQKDQKAREQRHEAEIEEHIGSAEDDLSAAEASLATYDSEAHNLETFIDSAPSYDPFQCPDTNVGLDGVQSSYNLGSDQYIERRSARRPNRRLTAVSRQKGPQKSQWAVANDSHTSQNSTLSKIEVIQKYGTHRDHRVATVANGCRVWSPKSKPEIDRMVPEARVDKEPDQDKDHEVLIGSISITLGNCSQSERNAVASRADCNVDNLANQNSSQNKPLNPDFFQNSNNMATKLWRPVSRHETKNPLPVQSGETEVSTIHENGDCQNQSDPSCLRSCSTDGSDVGFEINVSNTEGIMDPGSLQLLSSHAAKVFLEQRWKEAMSSNHLQLIVSDYEPPGCQEIQDSRMAVCQSSEVRVKRLAAAPKVPQSNHRMKPEKGTKIKYIPKQKTAA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03872 687 MobiDBLite consensus disorder prediction 540 567 - -
Aip05g03872 687 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 12 686 - -
Aip05g03872 687 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Aip05g03872 687 Coils Coil 271 313 - -
Aip05g03872 687 MobiDBLite consensus disorder prediction 660 687 - -
Aip05g03872 687 MobiDBLite consensus disorder prediction 291 310 - -
Aip05g03872 687 ProSitePatterns Zinc finger C2H2 type domain signature. 90 111 IPR013087 -
Aip05g03872 687 MobiDBLite consensus disorder prediction 538 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03872 Aip-Chr5 146925853 146931120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03872 20 684 C2H2 Transcription Factor Family AT4G25610 40.762 3.36e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g03872 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03872 - - gmx:100809067 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03872 05 146925853 146931120 Aip05g03872 05 146925853 146931120 ECH
Aip05g03872 05 146925853 146931120 Aip09g04029 09 146631270 146635128 PCT