Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03868 ATGGCTCCGAAGGCACCGAGTACGGGTCTTTTCGTTGGAATGAACAAGGGTCATATCGTCACCAAGAAGGAGCTGCCTCCCCGCCCCAGAGATCGCAAAGGGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAATCTCATTCGTGAGGTTGCTGGTTTTGCGCCGTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGAAAGGATAAGAGGGCATTGAAGGTTGCCAAGAGGAAGCTCGGTACCCATAAACGCGCCAAGAAGAAGAGAGAGGAGATGTCCAATGTCCTCAGAAAGATGAGGGCTGGTGGAGGCGGTGACAAGAAGAAGTAA 333 0.5075 MAPKAPSTGLFVGMNKGHIVTKKELPPRPRDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGDKKK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03868 110 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
Aip05g03868 110 MobiDBLite consensus disorder prediction 87 110 - -
Aip05g03868 110 Gene3D 60S ribosomal protein L36 2 105 IPR038097 -
Aip05g03868 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Aip05g03868 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Aip05g03868 110 MobiDBLite consensus disorder prediction 1 38 - -
Aip05g03868 110 MobiDBLite consensus disorder prediction 79 110 - -
Aip05g03868 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03868 Aip-Chr5 146906850 146908495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03868 8 110 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 83.495 1.01e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03868 K02920 - gmx:100785591 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03868 05 146906850 146908495 Aip09g04025 09 146603516 146605065 ECH
Aip05g03868 05 146906850 146908495 Aip05g03868 05 146906850 146908495 ECH