Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03858 CCGATAATGAAGCAGCCGAAGCCGAATTCACCCTCTCCCTCAGCCACCGTCCTGACTCGGACTCTAACTCGGACCACGACTCGCTCTCCGGACTCACCAACGATCCTTCCGACGTGGCGCTCTTCCTCCACACCTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGCTGACTCAGCACAACCTCTTTTCCTCCGTTCGCAACATCCAATCGGTGTACCGACTCACTGAGTCAGACTCGACGGTGATCGTGCTCCCTCTCTTCCACGTCCACGGCTTAATCTGCGGATTACTCAGCTCTATCGGCGCCGGAGCAGCCGTAGCCTTGCCGGCGGCGGGGAGATTCTCCGCGTCGACGTTCTGGAAAGACATGATCAAGTACAACGCCACGTGGTACACCGCGGTTCCAACGATACACCAGATCGTACTTGATCGCCACCAGAACAACCCCGAACCGGTTTACCCGAAGCTCCGGTTTATTCGTAGCTGCAGCGCGTCGCTGGCACCGGCTATTCTGGGTCGGTTGGAGGAGGCTTTCGGTGCACCGGTTTTGGAGGCTTATGCGATGACGGAAGCCTCTCATTTAATGGCTTCGAATCCGTTGCCGGAAGATGGGCCCCACAAGGCCGGGTCCGTTGGAAAGCCCGTGGGGCAAGAGATGCGCATATTGGATGAAACGGGCCGGGTCTTGGAGGCTGAGGTTAACGGTGAGGTTTGTATTAAGGGTCCCAATGTGACGAATGGTTATAAGAATAACCCAGATGCTAATACGGCGGCGTTTCAGTTTGATTGGTTCCATACCGGTGATCTTGGTTACTTTGATTCTGACGGCTATTTGCATATTGTGGGTCGGATCAAGGAGCTCATTAACCGTGGAGGAGAGAAAATATCACCAATAGAAGTGGATGCTGTCCTCCTATCTCATCCTGATATTGCTCAGGCGGTTGCTTTCGGAGTTCCCGATGACAAATACGGCGAGGAGATAAACTGTGCAATCATCCCAAGAGAAGGGTCAAACATTGATGAGGAAGAGGTGCTGAGATTTAGCAAGAAGAATCTTGCATCTTTCAAAGTCCCCAAGAAGGTCTTCATCACTGATTCATTGCCCAAGACAGCCACTGGCAAGATTCTACGCCGCCTAGTAGCTGAACATTTTGTCTCTCAAAAATGA 1169 0.5346 DNEAAEAEFTLSLSHRPDSDSNSDHDSLSGLTNDPSDVALFLHTSGTTSRPKGVPLTQHNLFSSVRNIQSVYRLTESDSTVIVLPLFHVHGLICGLLSSIGAGAAVALPAAGRFSASTFWKDMIKYNATWYTAVPTIHQIVLDRHQNNPEPVYPKLRFIRSCSASLAPAILGRLEEAFGAPVLEAYAMTEASHLMASNPLPEDGPHKAGSVGKPVGQEMRILDETGRVLEAEVNGEVCIKGPNVTNGYKNNPDANTAAFQFDWFHTGDLGYFDSDGYLHIVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFSKKNLASFKVPKKVFITDSLPKTATGKILRRLVAEHFVSQK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03858 388 Gene3D - 284 386 IPR045851 -
Aip05g03858 388 Gene3D - 2 283 IPR042099 -
Aip05g03858 388 PANTHER ACYL-COA SYNTHETASE 18 387 - -
Aip05g03858 388 Pfam AMP-binding enzyme C-terminal domain 299 374 IPR025110 -
Aip05g03858 388 Pfam AMP-binding enzyme 30 290 IPR000873 -
Aip05g03858 388 SUPERFAMILY Acetyl-CoA synthetase-like 28 385 - -
Aip05g03858 388 CDD FACL_fum10p_like 34 382 IPR045310 GO:0016874
Aip05g03858 388 ProSitePatterns Putative AMP-binding domain signature. 41 52 IPR020845 -
Aip05g03858 388 MobiDBLite consensus disorder prediction 1 29 - -
Aip05g03858 388 PANTHER OXALATE--COA LIGASE-LIKE 18 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03858 Aip-Chr5 146780327 146783154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03858 36 387 Monolignol Biosynthesis Gene Families AT4G05160 32.961 1.79e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03858 K22133 - gmx:100779306 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03858 05 146780327 146783154 Aip05g03858 05 146780327 146783154 ECH