Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03817 ATGGGGTGCCAGCAAATAGAAAAAACAAAAGCAAAACACAGAAAAGGGTTATGGTCACCTGAAGAAGATAACAAGCTCAGAAATTATATCCTAAACTATGGTCATGGTTGTTGGAGTTCAGTCCCCATTAAAGCAGGGTTGCAAAGGAATGGAAAGAGTTGCAGATTAAGGTGGATTAATTACTTGAGGCCAGGATTAAAAAGAGGCATGTTCACCAAACAAGAGGAGGATACAATTCTCACCTTTCACCACATGTTGGGAAACAAGTGGTCTCAGATAGCACAAAGATTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGGCATTCATATTTGAAGAAGAAAGTTGCCAAAGAAAAAGAGATTGATGAATCTCATCAACAAGTTCAGTATGCTACCTCAAGCTCAGAAACAATAGACTATTCATTCTCTCCCAATAAACTTGTAACTAATGATCCAAACTATGGATTGTTGCTACAAAACATGGATAAACCAGCACCAAATTTAGTTGATCACTCATATGAACATAATCATAATAATATTACTAATAATAATTACCAATTATCCAAGGAGGCTTCACATGGCTCCTTACCAAAATTGTTGTTTGCTGAGTGGCTTTCTTTAGACCAAGTAAATGGTGGTAGTTCTATGAACTCAGATGAGTCTTTGATGATATTGGGAAATGGGTTTGATCAAAATTCAACTTTTCAAGAAGATTTGATGCATATGTCATCATCAGAAGGACCCTTTGGTGGAGAATATCAGAATAGTCTAAGTCAATGTTCAGCAACTGAAGTGTACAATTCACAGGTTAATAAGTTCTCAAATCAGGTTGTTGGAAATGACTACATTCAACATTTCATTGATGATGATGCTGATTTGTGCAGCAATTTCAGCCTCAACAATGGTGCAATGTATGTTATGAGTAATTCACTATGA 942 0.3609 MGCQQIEKTKAKHRKGLWSPEEDNKLRNYILNYGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGMFTKQEEDTILTFHHMLGNKWSQIAQRLPGRTDNEIKNYWHSYLKKKVAKEKEIDESHQQVQYATSSSETIDYSFSPNKLVTNDPNYGLLLQNMDKPAPNLVDHSYEHNHNNITNNNYQLSKEASHGSLPKLLFAEWLSLDQVNGGSSMNSDESLMILGNGFDQNSTFQEDLMHMSSSEGPFGGEYQNSLSQCSATEVYNSQVNKFSNQVVGNDYIQHFIDDDADLCSNFSLNNGAMYVMSNSL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03817 313 CDD SANT 71 113 IPR001005 -
Aip05g03817 313 CDD SANT 18 62 IPR001005 -
Aip05g03817 313 Gene3D - 70 139 - -
Aip05g03817 313 PANTHER MYB TRANSCRIPTION FACTOR 1 301 - -
Aip05g03817 313 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Aip05g03817 313 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aip05g03817 313 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aip05g03817 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Aip05g03817 313 Gene3D - 15 67 - -
Aip05g03817 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aip05g03817 313 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Aip05g03817 313 PANTHER MYB DOMAIN PROTEIN 55 1 301 - -
Aip05g03817 313 SMART sant 14 64 IPR001005 -
Aip05g03817 313 SMART sant 67 115 IPR001005 -
Aip05g03817 313 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03817 Aip-Chr5 146415924 146421094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03817 8 128 MYB Transcription Factor Family AT3G48920 71.311 2.60e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g03817 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03817 K09422 - gmx:100803537 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03817 05 146415924 146421094 Aip05g03817 05 146415924 146421094 ECH