Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03816 ATGGGTGTCAAGAATTTGTGGGACATCCTCGAATCATGCAAGAAAACGGTTCCGCTTCACCATCTCCAGAACAAGAGGGTGTGCGTGGACCTATCGTGCTGGATGGTGCAGCTTCAGAATGTGAGCAAGTCACACGCTTGTATGAAGGAGAAGGTTTACCTCAGAGGCCTCTTTCACCGCCTCAGAGCTCTCATTGCTCTCAATTGCAACGTTGTTTTCGTCGCAGATGGGTCGATTCCTGCCATCAAATTATCAACTTATAGGCGTCGCTTGAACATGGGGAAAGAGGTGGAACATAATGAAACTAACTCACAGCAAGTGACATCATTAAGAAGAAACATGGGGTCTGAGTTTTCTATAATGATAAAGGAGGCTAAAGCCTTGGGGATGGCTCTTGGCATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTTTGAGTCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTTTTTGGTGCAAGGACGGTGTATAGGGATATCTGTCTCGGTGACGGTGGACATATTGTTTGTTATGAGATGGCAGACATTGAAACAAAACTTGGATTTGGAAGGGATTCACTGATTGCTCTCTCTTTACTTCTTGGCTGTGACTATTACCAAGGGGTTCATGGTTTGGGTCCGGAATCAGCTTGCCAGATTGTAAAATCAATTGGGGACAAATTTGTTCTTAAAAAAATTGCTTCTGAAGGGCTTGAATGGGCCAAAAAAAGAAAAGGAGGTGTAAATAATTTACAGAAAGACGAGAAGGTTTTGCAAGTAATTAATGCTTATATGAAACCAAAATGTCACTCAGCAGATTCAGATGTTGTGCATAGGGCTTTGGCTCAGTACCAGTTTCAACGTATTAAACTCCATCAGATATGTACTGAATTGTTTGAGTGGCCTTCAGAGAAAACAGATGGTTACATCCTTCCGAGCATCGCTGAGAGAGATTTACGAAGATTTGCTAATTTGCGGATAACTTCATCTGAACTTGGATTGAACCCTCCTTTACATGAGATCCCTGTGAAGTGTCCTGTTTCGGAAATAGTCAAGAACAGAAGAGTTCAAGGGAGAGAATGCTATGAAGTTTCTTGGGGAAAAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCATGTCCTGAGAAGATTTTGGAGTTTGAGGAGAGAAAAGCTCAAAAGAAGAAACAAAACATTCAGAAAAGAAGACCAAAGAAGAATGAAACTGCATCATCTGTGGCTGAACTTGATGAAAAGCTTCAGAATTTGTTGCTGGATATCAATCTGGGAGACAAAGGCAACCACAATGGTGAGAGTTTCGGATTTTCAACTGCAATGGCTGCAACTGATCTCAGCACCTCAGAGTTTTCATATCAATCTCATGGTAACATGGAACATACCAGGAACATATCTACCAATGATGCTGTTTCTAGTTCCATTACCATTTCAAGTATGCATAAAGTTGAGGTCATAGATCTTCTGAGCCCTTCACCAGCACCTAAGAAATGTCATGAACAACGATCAAGTAAACAAAATGTTGAAGTGATTAATTTGAGTGACATAGAAAATGACATGTCACCTGAACACAAGGAGAAAGCAAAAGACTTGAGATTGTTCTTAGCAAGTATTAGAAATGAAATGCACTGA 1698 0.4058 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQNVSKSHACMKEKVYLRGLFHRLRALIALNCNVVFVADGSIPAIKLSTYRRRLNMGKEVEHNETNSQQVTSLRRNMGSEFSIMIKEAKALGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGHIVCYEMADIETKLGFGRDSLIALSLLLGCDYYQGVHGLGPESACQIVKSIGDKFVLKKIASEGLEWAKKRKGGVNNLQKDEKVLQVINAYMKPKCHSADSDVVHRALAQYQFQRIKLHQICTELFEWPSEKTDGYILPSIAERDLRRFANLRITSSELGLNPPLHEIPVKCPVSEIVKNRRVQGRECYEVSWGKMDGLETSIVPADLIESACPEKILEFEERKAQKKKQNIQKRRPKKNETASSVAELDEKLQNLLLDINLGDKGNHNGESFGFSTAMAATDLSTSEFSYQSHGNMEHTRNISTNDAVSSSITISSMHKVEVIDLLSPSPAPKKCHEQRSSKQNVEVINLSDIENDMSPEHKEKAKDLRLFLASIRNEMH 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03816 565 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Aip05g03816 565 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Aip05g03816 565 Gene3D - 201 271 - -
Aip05g03816 565 CDD PIN_GEN1 2 198 - -
Aip05g03816 565 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Aip05g03816 565 Gene3D - 2 199 - -
Aip05g03816 565 MobiDBLite consensus disorder prediction 409 430 - -
Aip05g03816 565 SMART xpgineu 130 200 IPR006086 GO:0004518
Aip05g03816 565 Gene3D - 355 423 - -
Aip05g03816 565 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Aip05g03816 565 SMART HhH_4 202 235 IPR008918 GO:0003677|GO:0003824
Aip05g03816 565 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Aip05g03816 565 SMART xpgn3 1 97 IPR006085 GO:0004518
Aip05g03816 565 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 469 IPR006084 -
Aip05g03816 565 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 469 - -
Aip05g03816 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Aip05g03816 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Aip05g03816 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Aip05g03816 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Aip05g03816 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03816 Aip-Chr5 146402846 146407111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03816 1 236 Core DNA Replication Machinery Family AT5G26680 25.490 1.78e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03816 K15338 - gmx:100806919 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03816 05 146402846 146407111 Aip05g03816 05 146402846 146407111 ECH