Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03810 ATGAATTTCCTCAGGTACTGCCACGTCATCACCACCATCTTCCTTCTATCAGTACCCAACATTACTGCTCAATTGGCGGCTCCGTCAGCTCACCCACCAGTAGTCACCCAAAACAACGACGGAAACCCTTCCATTGCGATTATTCTCGTCGTTCTCATCTTCGCATTCTTCATGACTGGCTTCTGCGCCGTCTACATTCGCCACTGCAATGAAAGCTACGTCCTTCAGGGAGCTGCCGCTGCCAACGCCGCCACTGCTCCACGTGGCGTCGATCCGGAGGTGCTCTCCACGTTCCCAATTATGGTTTATTCCACCGTGAAGCACCTCAAAACGGGTCACAGTGCGTCGCTTCAGTGCGCTGTGTGCTTGAGCGAGTTCAAGGACATGGACAAGCTCAGACTTTTGCCCAAGTGCAGTCACGTGTTTCACCCTGAGTGCATCGACGCGTGGCTCGCCTCGCACGTGACTTGTCCTGTCTGCAGGGCCAAGATGAAGTCGGAAAACATGGAGTTCGAGGTTGAGATTCAGGAGTTAGAGGGAAGTGCCAACCATATGTTCGATGAAATGTCTGGGAGAATGGGTGAGGTTTCTTGTGATGGGAACGAAGGTGGGGATGGTGAGGGAGTTGATGGGGTTGTTGGGAAGTGTAATGGGACCTCAAAGGTGAGAGCTTTTGGGTTGTTGGTGAGGTCGCACTCTACGGGTCACTCTCTTGTGGAGCCGGGGAAGAGCTTGGAGAGGTTCACTTTGAGGTTGCCTGAGGAATTGAGGAAGCAGATTCTGGAAGCCAATCATAAGTGTAGTGGTGGTTGTGGTGGGATGAAGCGTTCGGCAAGCTACGACGTCGTTTTGCAGAGTGAAGTTGGTGAAGGTAGTAGTAGTAATAAGGGGAGTAAGAATAGTAGGTGGGTGCTGTCTATGACACCTCCGTTTGTTTCTCGCGGTTGGGGTCATTTTAGTACTTCTTCTGGTTTGGCACCGCCAAATGAGTGCTCAACATGCTCTGGGATTCCTAGGCTTTGGGGTTCTTCAGCGGCAAGGGAAGAGAAAGGATGTGAAGGGAGAGAGGGTTTGCAACTGGTATGA 1086 0.5184 MNFLRYCHVITTIFLLSVPNITAQLAAPSAHPPVVTQNNDGNPSIAIILVVLIFAFFMTGFCAVYIRHCNESYVLQGAAAANAATAPRGVDPEVLSTFPIMVYSTVKHLKTGHSASLQCAVCLSEFKDMDKLRLLPKCSHVFHPECIDAWLASHVTCPVCRAKMKSENMEFEVEIQELEGSANHMFDEMSGRMGEVSCDGNEGGDGEGVDGVVGKCNGTSKVRAFGLLVRSHSTGHSLVEPGKSLERFTLRLPEELRKQILEANHKCSGGCGGMKRSASYDVVLQSEVGEGSSSNKGSKNSRWVLSMTPPFVSRGWGHFSTSSGLAPPNECSTCSGIPRLWGSSAAREEKGCEGREGLQLV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03810 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 167 IPR013083 -
Aip05g03810 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 14 286 - -
Aip05g03810 361 CDD RING-H2_EL5_like 118 161 - -
Aip05g03810 361 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Aip05g03810 361 Coils Coil 161 181 - -
Aip05g03810 361 Pfam Ring finger domain 118 161 IPR001841 -
Aip05g03810 361 PANTHER RING FINGER DOMAIN-CONTAINING 14 286 - -
Aip05g03810 361 SUPERFAMILY RING/U-box 112 165 - -
Aip05g03810 361 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03810 Aip-Chr5 146359897 146360982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03810 2 314 Rapid Response to Elicitors AT3G05200 36.283 1.02e-54 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03810 K10664 - gmx:102665105 221.09