Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03806 ATGACTCCGCCTCCACCCACGCCGGTGGACACCTCCGATTCCCCCGCTACCGGCGGTGAGTCTCAGAGATCCATTCCGACTCCCTTTCTAACTAAGACCTACCAGCTCGTTGAGGACCAGTCCATTGATGACGTCATCTCCTGGAACGACGACGGATCCACCTTCATCGTCTGGAATCCTACCGTCTTCGCCAGAGACCTTCTCCCTAAGTATTTCAAGCACAACAATTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGGCTTTAGAAAAGTTGTACCTGATCGGTGGGAATTCTCCAACGACTGTTTCCGCCGGGGAGAGAAGCGCCTCCTCTGCGAGATTCAGCGCCGGAAGATCTCCACGCCGTCACCGTCGCCGTCTCCCACGGCTGCCGGGATTGCCACCGCCACCGTCGCGGTTCCTTCTCCGATGCCGTTGACCGCCATACCCACGGCGATGCCGATAATATCACCGTCTAACTCCGGCGACGAGCAGGTGATATCGTCGAGCTCTTCGCCGTCGCGAGCCCCGGCGGAGCTCCTCGACGAAAACGAGAGGCTACGGAAGGAGAACGTGCAGCTGACGAAGGAGCTCGCCGAGATGAGATCGCTTTGCAACAACATCTTCTCCCTGATGTCGAATTACGCCACCACCAACGCCGCCACAACTACCACCACAAACAACAGCAACAGCAACCAAATCAATGGAAGCGCCCAAGGAAGCAGAGATTCCGCTTTCACGGCAGTGAGGCCGCTAGATTTGATGCCGGTGAAGAGGAGTTCGAGCGGGGAACCGTGGACGGAAACGGCGACGGCGATGATGGTGGAGGAGATGAATCCTGGTAGTGGTGGTGGAGGAGAAGGGGAGGAGGATACGCTGTTGCGCCTTCATCAGCCTGGTTATGCGGACGTGAAATCGGAGCCGTTAGATTGCCAGAACCATCGCGATAATAGTAGTAATCAGGAGACCCCATGGCTGAATCAGTGCCACAGAGCGAATCAAAGAGTTTGCAATTGA 1020 0.5637 MTPPPPTPVDTSDSPATGGESQRSIPTPFLTKTYQLVEDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCEIQRRKISTPSPSPSPTAAGIATATVAVPSPMPLTAIPTAMPIISPSNSGDEQVISSSSSPSRAPAELLDENERLRKENVQLTKELAEMRSLCNNIFSLMSNYATTNAATTTTTNNSNSNQINGSAQGSRDSAFTAVRPLDLMPVKRSSSGEPWTETATAMMVEEMNPGSGGGGEGEEDTLLRLHQPGYADVKSEPLDCQNHRDNSSNQETPWLNQCHRANQRVCN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03806 339 MobiDBLite consensus disorder prediction 155 178 - -
Aip05g03806 339 MobiDBLite consensus disorder prediction 224 244 - -
Aip05g03806 339 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 325 IPR027725 -
Aip05g03806 339 SUPERFAMILY "Winged helix" DNA-binding domain 26 118 IPR036390 -
Aip05g03806 339 MobiDBLite consensus disorder prediction 12 26 - -
Aip05g03806 339 MobiDBLite consensus disorder prediction 155 181 - -
Aip05g03806 339 SMART hsfneu3 25 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03806 339 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03806 339 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03806 339 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03806 339 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 12 325 - -
Aip05g03806 339 MobiDBLite consensus disorder prediction 1 26 - -
Aip05g03806 339 ProSitePatterns HSF-type DNA-binding domain signature. 68 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03806 339 Coils Coil 185 205 - -
Aip05g03806 339 Gene3D - 21 119 IPR036388 -
Aip05g03806 339 Pfam HSF-type DNA-binding 29 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03806 Aip-Chr5 146324364 146326103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03806 1 339 HSF AT5G62020 46.610 3.80e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip05g03806 HSF_DNA-bind 1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03806 K09419 - gmx:100812267 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03806 05 146324364 146326103 Aip05g03806 05 146324364 146326103 ECH