Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03801 ATGCCTGGTTTCTCAGCTTTTGAGTTACCTCTTTCTTCTCCTCTCATTTCAATGTCAAAGCAAAATTTCCCTACCTTGTCTTTCTCCAATCAGAGGGAAATGATGGAGGGCCACAGTGAACTTGGTCTTATTGGAGATCATTTTGACGGCGGTTTGCTGGGCAGGATTAAGGAGGATGGGTATGAAAGCCGGTCCGGTAGCGACAATTTCGAAGGTGCATCTGGTGATGATCAAGAGGCTGCTAATGATCAGCCAAAGAGGAAGAAGAAATACCACAGGCACACTCCTCACCAAACTCAGGAGCTTGAAGCTTTCTTCAAGGATTGTAATCATCCTGATGAGAAGCAAAGGGCAGATCTTAGTAGAAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAAAATCGACGAACCCAAATGAAGACTCAAATCGAGCGCCATGAGAACATGATTCTTAAGCAGGAAAATGAGAGGCTCCGAGCTGAGAACAGTGTGATGAGGGAAGCTATGGCAAACCCAATGTGCAACAACTGTGGTGGAACAGCCATTCCAGGACAAATTTCATTTGATGAGCATCAGATTAGAATTGAAAATGCTCGGTTGAAGGATGAATTGAACCGTATATGTGCCTTGGCAAACAAGTTTCTCGGCAGGCCAATCTCATCATTGGCCAGCCCCATGTCCTTGCCTGCCTCGAATTCTGGTCTAGAGCTGGGTATTGGCAGGAATGGTTTTAGTGGTGGTTCAAGCGGTCTTGGCATGTCAATGGGGCTTGATTTTGGGGACTTTTCAGGGGGCACTCTGCCTGCGATTTCCGGGATTAGATCACCGATGGGGTTGATGGGAAATGAAATCCATGCGGAGAGATCTATGCTATTGGAACTTGCATTAGTGGCTATGGACGAATTAATCAAGATGGCTCAGGCAGATAGCCCACTTTGGATTAAGATGGATGGCGGGAAGGAAATTCTGAACCAAGAAGAGTATGCAAGAATGTCTTCTTTTATTTCTCCAACATCTCCGGGATATGTAACTGAAGCTTCGAGAGAAACCGGTGTAGTAATAATCAACAGTTCAGCCCTCGTTGAAACAATGATGGACCCGGAACGATGGTCGGAGATGTTTCCTTCTATGGTTTCTAGAGCTATAACCCTTGATGTTATAGCTAGTGGCATGGGTGGATCAAGAAATGGATCTTTGCAAGTGATGCAAGCGGAGATTCAATTGCTTTCGCCACTTGTTCCTGTTCGTCAATTGAGCTTCCTCAGGTTTTGCAAGCAGCATGCAGAAGGGTTGTGGGCAGTGGTAGATGCTTCAATTGATGCTGGTCGCAATTTTAAGAGGCTTCCATCAGGCTTTCTTGTGCAAGATACACCAAACGGTTTCTCAAAGATTACTTGGGTTGAGCATTCCCAATATGATGAGAGTCTCATTCACCAACTGTATCGGCCGTTGATTGCTTCCGGCCTCGGCTTCGGCGCTCCTAGATGGATTGCCACTCTCCAAAGGCAGTGTGAATGTTTGGCAATACACATGTCCTCTTCAATCCCAAGCGAGGACGCCACAGCCATAAGCCCAGCTGGTAGGAGAAGCATGCTGAAGCTTGCGCAACGCATGGCTAATAACTTCTTTTCCGGGATTTGTCTGTCTTCATCGCAAAAATGGGACACACACCATCTCGGCAATGTTGGTGATGAGATCAAAGTCATGACCCGGAAAAACATTGATGTCCCCGGTGAGCCCCCTAGCATAGTCTTGTGTGCGGCCACTTCAGTTTGGATGCCGGTGTCGCGGCAGAGGGTGTTTGACTTCTTGCGTGACGAACGGATGAGAGGGGAGTGGGTCATCTTATCCGCCATTGGACAAATGAAGGAGATGCTTCGCATTTCTAAAGGACAAGTTGATGGAAATTCCTTATCGGTCCTTCGTGCTAATGCTAATAATGGGGGCGAGAGCAGCAACAACACGCTGTTTTTGCAGGAGACATGGAACGATACCTCGTGCTCGGCGTTGCTGTATTCGCCGGTCGAGGTGGAATCGTTGAAAGTGGTAATGAGTGGAGGAGATTCCACATATGTTGCTCTCATCCCTTCAGGCTTTACCATTCATCCGGATGGTCATTCCGGCACACAAGACGGAGATGACGGTGGCAGTTCCGGATGCCTGCTCACAGTTGGGCTACAGATATTGCTGAACAGCCTCCCCACGGCCAAGCTCACGGCGGAGTCGGTCGAAACCGTGAACGACCTCATCACAGGCACCATTCAGAAGATCAAAGCTTCACTAGGAGTTGCATAG 2304 0.4787 MPGFSAFELPLSSPLISMSKQNFPTLSFSNQREMMEGHSELGLIGDHFDGGLLGRIKEDGYESRSGSDNFEGASGDDQEAANDQPKRKKKYHRHTPHQTQELEAFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMKTQIERHENMILKQENERLRAENSVMREAMANPMCNNCGGTAIPGQISFDEHQIRIENARLKDELNRICALANKFLGRPISSLASPMSLPASNSGLELGIGRNGFSGGSSGLGMSMGLDFGDFSGGTLPAISGIRSPMGLMGNEIHAERSMLLELALVAMDELIKMAQADSPLWIKMDGGKEILNQEEYARMSSFISPTSPGYVTEASRETGVVIINSSALVETMMDPERWSEMFPSMVSRAITLDVIASGMGGSRNGSLQVMQAEIQLLSPLVPVRQLSFLRFCKQHAEGLWAVVDASIDAGRNFKRLPSGFLVQDTPNGFSKITWVEHSQYDESLIHQLYRPLIASGLGFGAPRWIATLQRQCECLAIHMSSSIPSEDATAISPAGRRSMLKLAQRMANNFFSGICLSSSQKWDTHHLGNVGDEIKVMTRKNIDVPGEPPSIVLCAATSVWMPVSRQRVFDFLRDERMRGEWVILSAIGQMKEMLRISKGQVDGNSLSVLRANANNGGESSNNTLFLQETWNDTSCSALLYSPVEVESLKVVMSGGDSTYVALIPSGFTIHPDGHSGTQDGDDGGSSGCLLTVGLQILLNSLPTAKLTAESVETVNDLITGTIQKIKASLGVA 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03801 767 SUPERFAMILY Homeodomain-like 75 145 IPR009057 -
Aip05g03801 767 Pfam START domain 297 509 IPR002913 GO:0008289
Aip05g03801 767 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Aip05g03801 767 CDD START_ArGLABRA2_like 291 508 - -
Aip05g03801 767 SMART START_1 296 509 IPR002913 GO:0008289
Aip05g03801 767 ProSiteProfiles START domain profile. 287 512 IPR002913 GO:0008289
Aip05g03801 767 Coils Coil 139 174 - -
Aip05g03801 767 SMART HOX_1 87 149 IPR001356 GO:0003677
Aip05g03801 767 Gene3D - 74 161 - -
Aip05g03801 767 MobiDBLite consensus disorder prediction 59 97 - -
Aip05g03801 767 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 30 765 - -
Aip05g03801 767 CDD homeodomain 88 145 IPR001356 GO:0003677
Aip05g03801 767 SUPERFAMILY Bet v1-like 528 751 - -
Aip05g03801 767 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Aip05g03801 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 765 IPR042160 -
Aip05g03801 767 SUPERFAMILY Bet v1-like 290 509 - -
Aip05g03801 767 Pfam Homeodomain 88 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03801 Aip-Chr5 146272252 146280166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03801 62 764 Homeobox Transcription Factor Family AT3G61150 57.241 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip05g03801 START 1.2e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03801 K09338 - gmx:100785102 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03801 05 146272252 146280166 Aip09g03995 09 146381088 146385692 ECH
Aip05g03801 05 146272252 146280166 Aip05g03801 05 146272252 146280166 ECH