Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03778 ATGGCACCTTCTCGGGTGGCTGGAGGATTGACCCAATCATCATCAAGTTCTGGAATTTTTTTTCAAGGAGATGCACAATCACATAGTGTAGTTAACTCTCCGTTAAACTCGCCATTCATTAACTCATCTAATGCGGTTCCTGGAACTGGTCTTCCAAACCTGGGTCCAGTGTCAGGGGATATGAACAATACAATTTTGAACAGTGCGGCAAACTCAGCACCAAGTATTGGACCTAGCTCTTTACTCACAGATGCAAATTCAGCATTCGCTGGTGGGCTCCATTTGCCAAGAAGTGCAAGCATTAACACAGACTCATACTTACGGTTACCTGCTTCACCCATGTCATTTACATCAAATAATGTTAGTATTTCAGGGTCATCAGTTATGGATGGTTCGAATGTAGTACAACAGAGCTCTCACCAAGATCAGAATGCTCAACCATTGCAGCAGAATCAGCAGCAAGGAGCTTCTAGTGTTATGTCTACACCTGTGTCTCAAATTGGTCCTTCCCCACTTCAAATGGGTGCACAAATACCTGGATCTTTCATGCAAGATCCAAATAATTTATCTCAGCTGTCCAAAAAACCGAGGCTGGATATCAAGCAGGAGGATTTAATGCAACAGCAGGTGATACAGCAGCTTCTTCAGAGACAGGACCCCATGCAATTCCAGGGTCGTAATCCACAGATACAGGCTTTGATGCAACAGCAGCAAAGACTGAGGCAACAGCACATCCTTCAGTCAATGCCACAGTTACAGCGAGCACACTTACAACAACAGCAGCAGCAACAGCAACAAATGCACTTGAGGCAGCAGCAATTACAGCAACAATCAATGCAACCCATATCTGCGGTGAAGCGTCCGTATGACAGTAGCGTTAATGGTGTATGTGCTCGAAGATTAATGCAATACCTCTATCATCAAAGGCAACGACCAATTGAAAACACTATTGCTTATTGGAGAAAATTTGTGGCCGAGTATTACTCTCCTCGAGCAAGGGAACGGTGGTGCTTGTCTTTGTATAATAATGTTGGGCATCATGCACTAGGTGTTTTCCCTCAGGCATCTATGGATGCGTGGCAGTGTGACATATGTGGTTCTAAATCTGGAAGGGGATTTGAGGCAACTTTTGAAGTTCTCCCTAGACTTAGTGACATCAAATTTGGCAGTGGAGTTATCGATGAACTTTTATTTTTGGATTTGCCACGCGAACAAAGATTTCCTTCTGGTTTAATGATGTTAGAATATGCAAAAGCGGTTCAAGAGAGTGTATATGAGCAGCTTCGTGTTGTTCGTGAAGGTCACCTCCGTATTATATTTACACAAGACCTGAAGATATTATCTTGGGAGTTCTGTGCAAAGCGCCATGAAGAACTTCTTCCTAGAAGGTTGGTTGCACCACAGGTAAATCAGTTGGTTCAAGTAGCTCAAAAATGCCAGAGTACAGTTGCTGAAAGTGGTCCAGATGGGGTTTCTCAGCAAGATCTTCAAACAAACAGTAATATGGTATTGGCTGCTGGGCGTCAACTTGCAAAGAGTCTCGAGTTGCAATCAGTAAATGACTTGGGTTTTTCCAAAAGATATGTAAGATGTTTGCAGATTTCCGAGGTTGTCAATTCCATGAAAGATCTCATGGATATCTGTCGGGAGCACAAAATTGGGCCAATGGAGAGCTTGAAAACTTATCCTCGTTTTGCAACCCCTGCCAAGCTTGAGAAGCAAAAAATTCATGAGATGGAACAGCTAGCAAATGCTCAAGGTCTGCCAACCGAACGAAACACACTCAACAAACTGATGGCACTGAATCCTGGTCTGAACAACCCAATAAACAATAATCTTAATATGGGGAATCGTGGTGCTTTGAGTGGGTCAGCACAAGCTGCTCTCGCAATGTCTAACTACCCGAATCTTCTCATTAGACAAAACTCAATGAATTCAAGCCCTGGCTCAATTCAGCGAGAAGGATCGTCATCTTTCAACAATGCGAACCAGAGTCCCTCTTCAGCTATGCAAGGTGCTGCTGCCTCTGCTTTTATTCCAGGCTCAATGCAGAATTCAACCGGTTTCCCAAGTCCCCATCTACCCCCACAGCAGCGGCAGCAACACCTTCTACAGCGTTCAGCAAGTGCGAATGGTTTACTGCAACAAAACCATTCACAGGGATCCCAAGGAAATCAAGCTCTACAGCAGCAGATGATCCAGCAACTGCTGATGTCAAATAACAATGGGGGAGTGCAATCACAATCTCTTAGTGGACCCAATGCAAATGGGAACATAGCAAAGAATGGGTTGAGTTTTGGAGGCCACTCTCCTACTCCTTCCATAACTGGAGGATCTATCAATGTTTCAGGAAACAACGGCCCTGTTTCAAGGAGTAATAGCTTCAAAGTGGCCTCAAACAGTGATTCTTCTGCAGCCGGCGGCAACAATGGTATCAACCAGAGAACGCCAGATATGCCACAAAATATCCTTTTGCAAGATGTGGTTCCGGATATTGTCGGTGATTTCACCGATAGTCCCTTCTTCAATAGTGATCTAGATGATAACATGGGTTTTGGCTGGAAGGCATAA 2571 0.4422 MAPSRVAGGLTQSSSSSGIFFQGDAQSHSVVNSPLNSPFINSSNAVPGTGLPNLGPVSGDMNNTILNSAANSAPSIGPSSLLTDANSAFAGGLHLPRSASINTDSYLRLPASPMSFTSNNVSISGSSVMDGSNVVQQSSHQDQNAQPLQQNQQQGASSVMSTPVSQIGPSPLQMGAQIPGSFMQDPNNLSQLSKKPRLDIKQEDLMQQQVIQQLLQRQDPMQFQGRNPQIQALMQQQQRLRQQHILQSMPQLQRAHLQQQQQQQQQMHLRQQQLQQQSMQPISAVKRPYDSSVNGVCARRLMQYLYHQRQRPIENTIAYWRKFVAEYYSPRARERWCLSLYNNVGHHALGVFPQASMDAWQCDICGSKSGRGFEATFEVLPRLSDIKFGSGVIDELLFLDLPREQRFPSGLMMLEYAKAVQESVYEQLRVVREGHLRIIFTQDLKILSWEFCAKRHEELLPRRLVAPQVNQLVQVAQKCQSTVAESGPDGVSQQDLQTNSNMVLAAGRQLAKSLELQSVNDLGFSKRYVRCLQISEVVNSMKDLMDICREHKIGPMESLKTYPRFATPAKLEKQKIHEMEQLANAQGLPTERNTLNKLMALNPGLNNPINNNLNMGNRGALSGSAQAALAMSNYPNLLIRQNSMNSSPGSIQREGSSSFNNANQSPSSAMQGAAASAFIPGSMQNSTGFPSPHLPPQQRQQHLLQRSASANGLLQQNHSQGSQGNQALQQQMIQQLLMSNNNGGVQSQSLSGPNANGNIAKNGLSFGGHSPTPSITGGSINVSGNNGPVSRSNSFKVASNSDSSAAGGNNGINQRTPDMPQNILLQDVVPDIVGDFTDSPFFNSDLDDNMGFGWKA 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03778 856 PANTHER LIM DOMAIN-BINDING PROTEIN 159 855 IPR029005 -
Aip05g03778 856 PANTHER LIM DOMAIN-BINDING PROTEIN 5 150 IPR029005 -
Aip05g03778 856 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 159 855 - -
Aip05g03778 856 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 150 - -
Aip05g03778 856 Coils Coil 257 277 - -
Aip05g03778 856 MobiDBLite consensus disorder prediction 127 165 - -
Aip05g03778 856 Pfam LIM-domain binding protein 300 560 IPR029005 -
Aip05g03778 856 MobiDBLite consensus disorder prediction 743 818 - -
Aip05g03778 856 MobiDBLite consensus disorder prediction 640 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03778 Aip-Chr5 145940478 145946557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03778 281 569 C2H2 Transcription Factor Family AT1G43850 57.439 6.03e-108 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03778 - - gmx:100816886 1179.47