Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03766 ATGCTATTCTCCACTGGAGACGGTGACCTCTTCGAGTCTGACAATCAGAGCTACTTGAGCTCCGGTGTCCTCGTCCTCGCCGGCAGGAGCCTCCTCCTCTTCGCGGTGTTTGGCTTCGATCTTGTAAAAACTGCTAGGTTTAAAGAGCTTGCTCCCTATAATCCTGATTGGTATTTTGTTAGAGCAGGTCTTGTAAAAACTGATAGGTTTAAAGAGTTTGCTCCCTACGATCGTGATTGGTATTTTGTTAGAGTAGATAAGACATTTAGTTCAATTTTCATTACAGCTTCTATGGCAAGAAAGATCTATCTGAGAGGCGGTGTTGGTGTTGGTGCTTTCAAAAGGATTTATGGTGGTAGCCAGAGGAATGGAAGCTGCCCCCCACATTTCTGCGAGAGCAGTGGTGCTATTGCTAGACATATTTTGCAACCGCTGGAAAGCATGACCGTTATTGAGGGCGATAATAAATTTCTGGATATTGAAATCTCTGCTGAGATGCTCACTACTACAAATAATGGCTCTGCAATAACATGTAATGGCTCTGCAATAACATGTAACTACTCAGTTTCAAAGCAGATGCAGAGACCCTCGTTGAACTCATGTTTGGGAATCAAGCAAACTAAGCTAAGGGCCATCAAAGGGTTGCTGCTGATGAGGATCTTCACTTGA 669 0.4395 MLFSTGDGDLFESDNQSYLSSGVLVLAGRSLLLFAVFGFDLVKTARFKELAPYNPDWYFVRAGLVKTDRFKEFAPYDRDWYFVRVDKTFSSIFITASMARKIYLRGGVGVGAFKRIYGGSQRNGSCPPHFCESSGAIARHILQPLESMTVIEGDNKFLDIEISAEMLTTTNNGSAITCNGSAITCNYSVSKQMQRPSLNSCLGIKQTKLRAIKGLLLMRIFT 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03766 222 PANTHER 40S RIBOSOMAL PROTEIN S19 64 156 IPR001266 GO:0003735|GO:0005840|GO:0006412
Aip05g03766 222 SUPERFAMILY "Winged helix" DNA-binding domain 64 156 IPR036390 -
Aip05g03766 222 SMART Ribosomal_S19e_2 32 169 IPR001266 GO:0003735|GO:0005840|GO:0006412
Aip05g03766 222 PANTHER 40S RIBOSOMAL PROTEIN S19 40 62 IPR001266 GO:0003735|GO:0005840|GO:0006412
Aip05g03766 222 ProSitePatterns Ribosomal protein S19e signature. 127 146 IPR018277 GO:0003735|GO:0005840|GO:0006412
Aip05g03766 222 Gene3D - 37 63 IPR036388 -
Aip05g03766 222 Gene3D - 64 193 IPR036388 -
Aip05g03766 222 PANTHER 40S RIBOSOMAL PROTEIN S19-3 64 156 - -
Aip05g03766 222 Pfam Ribosomal protein S19e 64 154 IPR001266 GO:0003735|GO:0005840|GO:0006412
Aip05g03766 222 PANTHER 40S RIBOSOMAL PROTEIN S19-3 40 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03766 Aip-Chr5 145737609 145741591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03766 64 156 Cytoplasmic Ribosomal Protein Gene Family AT5G15520 66.667 9.81e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03766 K02966 - csv:101223214 134.806