Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03744 ATGACTCTGATAACCACAACGACAATGGAGGTGCGTGGCGTTGACCGCGACGAAGACGCGGGGTTTGGGGGAGAGAAAGGGGGAGAGGAATCCGGTTGGAGAGGTTGTGTCGGTGATCAAATTTCTTGGAAATGGGTTCATGAAGATggaaatgccgtcatgAAGCTTGTATATTTTGTGCCCTACCTTTTCTTGTTTTTACCAAATGGGGGCATCCACCAACTTCTGAAGAAGAAGATGGTGAGAGGAAAGATTGAGATGAAAAGGATAGAGAATGCAACAAGCCGTCAAGTAACGTTTTCAAAGAGGAGGAGTGGGCTTCTAAAGAAAGCACATGAGCTTTCTGTTCTTTGTGATGCACAAATTGCTCTTATAATCTTTTCACAAAGTGGGAGGCTCTTTGAATACTCAAGTACTTCAGACATGGAACAAATGTTGGAACGCTACCGTCAATATGTAGCAGATGATGGTCGTATCAATAATATTGGAGAATTCCAGCAATTGGAATTTGATCCCCCAAGCTTGGCTAAGAAGATTGAACTTCTTGAGCTTTCTCAAAGGAAGCTAATGGGACAGGGCCTGAGCTCTTGTTCATTTGATGAACTCGTTGGAATTGAGAATCAGCTTGTGTCAAGCTTGCAAAACATTAGGCTCAAAAAGGCTCAGCTTTATAGAGAGCATATTGAACAACTACAAAATAAGGAGAAGGATTTGCTCCTAGAGAATGCCAAATTAACTGAAATGTGTGTGCAAAGAAAAAAATCAGAAGAGCGATGGGACAAACAGAGAGACACAACATTATCCCCTAGTCCAAGTAACCAAAGTTCTGTTCTTGTGGAGACTGAATTGTTCATTGGACTTCCCGAATGGCGCTAG 876 0.4167 MTLITTTTMEVRGVDRDEDAGFGGEKGGEESGWRGCVGDQISWKWVHEDGNAVMKLVYFVPYLFLFLPNGGIHQLLKKKMVRGKIEMKRIENATSRQVTFSKRRSGLLKKAHELSVLCDAQIALIIFSQSGRLFEYSSTSDMEQMLERYRQYVADDGRINNIGEFQQLEFDPPSLAKKIELLELSQRKLMGQGLSSCSFDELVGIENQLVSSLQNIRLKKAQLYREHIEQLQNKEKDLLLENAKLTEMCVQRKKSEERWDKQRDTTLSPSPSNQSSVLVETELFIGLPEWR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03744 291 CDD MADS_MEF2_like 82 156 IPR033896 GO:0000977|GO:0045944
Aip05g03744 291 PANTHER MADS BOX PROTEIN 80 288 - -
Aip05g03744 291 ProSiteProfiles MADS-box domain profile. 80 140 IPR002100 GO:0003677|GO:0046983
Aip05g03744 291 Coils Coil 221 248 - -
Aip05g03744 291 ProSiteProfiles K-box domain profile. 165 255 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g03744 291 Gene3D - 93 156 IPR036879 GO:0003677|GO:0046983
Aip05g03744 291 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 89 136 IPR002100 GO:0003677|GO:0046983
Aip05g03744 291 PRINTS MADS domain signature 117 138 IPR002100 GO:0003677|GO:0046983
Aip05g03744 291 PRINTS MADS domain signature 102 117 IPR002100 GO:0003677|GO:0046983
Aip05g03744 291 PRINTS MADS domain signature 82 102 IPR002100 GO:0003677|GO:0046983
Aip05g03744 291 SUPERFAMILY SRF-like 82 156 IPR036879 GO:0003677|GO:0046983
Aip05g03744 291 Pfam K-box region 173 249 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g03744 291 SMART madsneu2 80 139 IPR002100 GO:0003677|GO:0046983
Aip05g03744 291 PANTHER MADS-BOX PROTEIN SOC1 80 288 - -
Aip05g03744 291 ProSitePatterns MADS-box domain signature. 82 136 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03744 Aip-Chr5 145534371 145547486 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03744 80 291 MADS-box Gene Family AT4G22950 49.321 2.52e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip05g03744 K-box 8.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03744 - - gmx:100800580 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03744 05 145534371 145547486 Aip05g03744 05 145534371 145547486 ECH