Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03741 ATGGGAAGAGGGAGAGTGGTTCTGGAGAGAATAGAGAACAAGATAAACAGGCAAGTTACATTTTCAAAGAGAAGGAGTGGTTTGTTGAAGAAAGCTTTTGAATTATCAGTGCTTTGTGATGCTGAAGTAGCACTCATCATCTTCTCTAGTCGCGGCAAGCTTTTTCAGTACAGCAGTTCTGACATTAGTGGAATTATTGAGAGGTATCGCCAATGTCGTTACAACAAGTTGTCACAGACTGGCAATTTATTTGATCAGCAATCACAGGTTTTTCCTTCGTTAGAATTCTTGAAATTAAAGGTAAAATATGAATCTCTGGAGCGAACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCCCTTGGCATGAAGGAACTGATGAACCTTGAGAAACAAGTAGAAAGAACTCTTGCACAAGCTCGACAGCTCCATATGAAGAAGCTCATAACACGACAGGCAGAATTAAGTGAAAAGGTGCACGAGGACCAGGAGCTCAACAAAAAGTTGAAATTCAAGTTAAGAGATGAATTCCCAGACCTAATTGCTGAGCACAACAACCCTATTCATGAGTTGAATGAAGTACAAGCCATTAATCAGTTCCAGTCTGAGACGCTCTTAAACAACACACGCATGTTTGAGCATCATAATCAGGAGGGAAAAGCAAGTGGCACAAGGCAACAAGATGGTCAGAGCAGCCATGACAGAAACAACAATGGTTGGCTTGTGTGA 729 0.4129 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSSDISGIIERYRQCRYNKLSQTGNLFDQQSQVFPSLEFLKLKVKYESLERTQRHFQGEELEPLGMKELMNLEKQVERTLAQARQLHMKKLITRQAELSEKVHEDQELNKKLKFKLRDEFPDLIAEHNNPIHELNEVQAINQFQSETLLNNTRMFEHHNQEGKASGTRQQDGQSSHDRNNNGWLV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03741 242 MobiDBLite consensus disorder prediction 215 242 - -
Aip05g03741 242 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 240 - -
Aip05g03741 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip05g03741 242 Coils Coil 123 146 - -
Aip05g03741 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Aip05g03741 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g03741 242 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Aip05g03741 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip05g03741 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip05g03741 242 MobiDBLite consensus disorder prediction 222 242 - -
Aip05g03741 242 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Aip05g03741 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip05g03741 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip05g03741 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip05g03741 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g03741 242 PANTHER MADS BOX PROTEIN 1 240 - -
Aip05g03741 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03741 Aip-Chr5 145500250 145504571 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03741 1 182 MADS-box Gene Family AT2G45650 52.660 1.37e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip05g03741 K-box 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03741 K09264 - gmx:100793681 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03741 05 145500250 145504571 Aip05g03741 05 145500250 145504571 ECH