Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03727 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTGATTCAGTTTTCTAATAGCTCCCACCAACACAAAATCTCCCAAGATCTGATCCTTGAAGATTATGCTTCTCTTGATGTCAATGATTCTGATAAAATATTGTTCACAAAAAGCCAATCATCAAATAAACTATTTTATGATGGTGCTGCTGCTGCTGATGAGGATAACAACAACAACAACAACAACAACAACAACAACAATGATTCTAACAACGATGATGATAATAATAAGAAGAAGATGGTTCATAGAGAGATTGAGAGGCAAAGGAGGAAAGAAATGGCTACCCTTTATTCCTCTCTTAGATCCCTTCTCCCTCTTCAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGTACATGCAAAATAACATCAAGGAACTTGGTGCTAAAAGAGATGAACTGAAGAAGAAGAAGAATCTCTCAAATTATTACCACCACCATGATAACAATGATAAACCTACATCTAGCACTAACAGATACTTCACTCTCCATGAGAGTGATAGTGGTGTTCTCGGAATTGAAATCACCGGTGGCGCCGCCGCCGCCGGAGAAGAAGAAGGTGTCACACTATCAGAGATTCTGGGGCTACTGGTTGAAGAAGAAGGACTTGAAGTTATTGGTTACCTTTCTAGCAAAGTCAATGGAAGATTGGTCCACAGTGTTCAGTGTGAGGTAGTCAATTCCAACAGTGTAGATCTATTTGAGCTGAGAAGGAAACTTGCAAGTTTAATTCAATGA 795 0.3937 MFPLQRGNELVIQFSNSSHQHKISQDLILEDYASLDVNDSDKILFTKSQSSNKLFYDGAAAADEDNNNNNNNNNNNNDSNNDDDNNKKKMVHREIERQRRKEMATLYSSLRSLLPLQFIKGKRSISDHMNEAVNYIKYMQNNIKELGAKRDELKKKKNLSNYYHHHDNNDKPTSSTNRYFTLHESDSGVLGIEITGGAAAAGEEEGVTLSEILGLLVEEEGLEVIGYLSSKVNGRLVHSVQCEVVNSNSVDLFELRRKLASLIQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03727 264 Pfam Helix-loop-helix DNA-binding domain 88 140 IPR011598 GO:0046983
Aip05g03727 264 SMART finulus 93 145 IPR011598 GO:0046983
Aip05g03727 264 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 263 - -
Aip05g03727 264 Coils Coil 136 156 - -
Aip05g03727 264 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 263 IPR015660 GO:0003700|GO:0006357
Aip05g03727 264 Gene3D - 77 165 IPR036638 GO:0046983
Aip05g03727 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 139 IPR011598 GO:0046983
Aip05g03727 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 162 IPR036638 GO:0046983
Aip05g03727 264 MobiDBLite consensus disorder prediction 63 80 - -
Aip05g03727 264 MobiDBLite consensus disorder prediction 61 94 - -
Aip05g03727 264 CDD bHLH_AtORG2_like 88 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03727 Aip-Chr5 145295918 145297017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03727 81 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 41.111 4.29e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g03727 HLH 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03727 - - aip:107644748 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03727 05 145295918 145297017 Aip05g03727 05 145295918 145297017 ECH