Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03669 ATGGTGGATAGGGATTCAAGTGAAGCACACATGTCAATAGCCGCTTCTTCCATGTTCCCTGGCTTCAGGTTCTGTCCCACGGACGGTGAATTAATCTCTTATTACCTCAGAAAAAAATTGGACGGTGACGAGGACAGTGTTCAGATTATTTCGGAGCTTGAGCTTTGCACCTTTGAGCCTTGGGATTTGCCTGAAAAATCGTTCATTAAATCAAATGATGAGTGGTTTTTCTTCTCGCGACGGTGGAGAAGGTATCCCAATGGTTCACAGAATAAAAGGGCAACTAAAAGTGGTTATTGGAAGGTCACAGGAAATGAGCGACAGATAGAGTCTGGTCAGAATGTGATTGGTACCAAACGTACTTTGGTATTCCATGTCGGTCGAGCTCCCAAAGGCGAAAGAACTGAATGGATTATTCATGAATACTGTATCAATGACAAATTTCAGGATTCTTTGGTGGTTTGTCGGCTCAAGAGGAACACAAAATTTCGTGCAAATGATGATTCTAACAGAACTTCACGCGAGAGTGGTTGTGGAGTCTCAGAAGGGGTTACAGTTCAAATGAGCACTTGTGTGCCTATTCAAGATAAAGAGGTTGGGTGTAGTTCCAAGAGGAGTAACAATAGTAATAGTTCTCCTTCTATTACTGTCCAAATTAAATCCAGTGATAGAGTTGCCAATGAAGACAATCCCAAAGCTTCTTCCAATGAATCCAGTGATAGAGTTGCCAATGAAGCCAATCCCAAAGATAGAGTTGCCAATGAAGCCAATCCCAAAGCTTCTTCCAATGAATCCAGTGATAGAGTTGCCAACGAAGCCAATCCCAAAGCTTCTTCCAATCACTCTAAGCCCTCCGCCATCGCCACCGCATCCCGCATCCACAGCAGTGACGAGTTTAACCACCGCAGCCACCACCGCGTCCTCTTTCGTCGCCGAGATCGCCTCCTCTTTCGTCGCCGTTACTCGTCGCCGctcgccgctgtgtcgccactcgccgctgtgtcgccacttgctgtcgtctcgccgggcgccgtccatgtcgccgtcgaagGAAAGATGATAAATGTTGGCTTTTTCCGTATAGATGCTCTTAAGCTTCCGACAGTTGGCCCTTGGCGTCCATGGTACGACGAAGGGCAGGTTGGAGGGTGGACACAAGAATATGATGAACTCACCTTTGTGGCAGTAAGGGGAGCAGGACATGAAGTTCCTTTGCATAGACCAAAACTTGCTCTTTCACTCTTCAAAGCCTCAATAGCTGGAACCTCCATGCCCACTCTTCAGCTTGTCAGTGACTCCTAA 1302 0.4293 MVDRDSSEAHMSIAASSMFPGFRFCPTDGELISYYLRKKLDGDEDSVQIISELELCTFEPWDLPEKSFIKSNDEWFFFSRRWRRYPNGSQNKRATKSGYWKVTGNERQIESGQNVIGTKRTLVFHVGRAPKGERTEWIIHEYCINDKFQDSLVVCRLKRNTKFRANDDSNRTSRESGCGVSEGVTVQMSTCVPIQDKEVGCSSKRSNNSNSSPSITVQIKSSDRVANEDNPKASSNESSDRVANEANPKDRVANEANPKASSNESSDRVANEANPKASSNHSKPSAIATASRIHSSDEFNHRSHHRVLFRRRDRLLFRRRYSSPLAAVSPLAAVSPLAVVSPGAVHVAVEGKMINVGFFRIDALKLPTVGPWRPWYDEGQVGGWTQEYDELTFVAVRGAGHEVPLHRPKLALSLFKASIAGTSMPTLQLVSDS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03669 433 SUPERFAMILY alpha/beta-Hydrolases 360 426 IPR029058 -
Aip05g03669 433 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Aip05g03669 433 MobiDBLite consensus disorder prediction 200 242 - -
Aip05g03669 433 Pfam Serine carboxypeptidase 361 420 IPR001563 GO:0004185|GO:0006508
Aip05g03669 433 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 12 247 - -
Aip05g03669 433 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 247 - -
Aip05g03669 433 MobiDBLite consensus disorder prediction 199 304 - -
Aip05g03669 433 ProSitePatterns Serine carboxypeptidases, histidine active site. 391 408 IPR033124 GO:0004185
Aip05g03669 433 Gene3D NAC domain 27 166 IPR036093 GO:0003677|GO:0006355
Aip05g03669 433 Gene3D - 353 421 - -
Aip05g03669 433 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Aip05g03669 433 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Aip05g03669 433 MobiDBLite consensus disorder prediction 256 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03669 Aip-Chr5 144472332 144482508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03669 6 187 NAC Transcription Factor Family AT2G27300 62.088 1.11e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip05g03669 NAM 5.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03669 - - aip:107641470 571.622