Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03664 ATGGAGAACAAACAAGATGGTGTAAGCAATGGTGATGGTGATGGGCTACATGACATTGAAAATGAAGGTGTATTGTTGGATGGGAAGGGCGAAATTCGGAGGAATTGGTCGGAGTTTTCGGAAAGGAACATGTCATATGCAGAGCCACTGCTTGTTAAAAGGACTAACACAACCTCCCAGATTGCTATAATTGGTGCCAACCTCAGCCCCATTGAAAGCCTTGATTATGAGATTTTTGAGAATGAAATTTTTAATCAGGATTGGAGGTCCAGGAAGAAAATTCAGATAATCCAGTATGTGATACTTAAGTGGGGATTTGCTCTTATTATTGGATTAGGCACTGGACTAGTTGGCCTCTTCAATAATATTTCAGTTGAGAACATTGCAGGTTTCAAGTTGCTTATGACAACCACTCTCATGACTCAACACAGATATCTTGAGGCTTTTGTAGCATATGCCGGTATCAATGTAGTTTTAGCAGCAGCAGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCGGAGGTGAAAGCATATTTGAACGGCGTGGATGCGCATTCTATACTCGCTCCGAGCACTCTTTTTGTAAAGATTTTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTAGGCAAAGAAGGACCTATGGTACATACAGGTGCATGCATAGCTAATTTATTGGGGCAAGGAGGATCTCGCAAGTACGGCTTAACTTGGAATTGGCTTAGATATTTCAAGAATGACAGGGACCGGCGAGACATGATTACTTGTGGCGCGGCTGCTGGTGTTGCTGCTGCCTTTCGCGCACCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGAGGAGTGCTCTTTTGTGGAGGACATTTTTCACCACAGCAGTAGTTGCTATTGTTTTAAGAGCTGCAATTCAGCTTTGCGCCACCGGGAAATGCGGCTTATTCGGAGAAGGTGGTCTGATAATGTATGATGTTGGTTCTTCAAAGGTAACATACAGCGCCGGCGACGTACTAGCAGCAATACTATTGGGAGTCATTGGAGGAGTTCTTGGAAGTGTATATAACTACCTTGTGGATAAGGTTATTCGGACATATAGCATCATCAATGAAAAAGGTGCAGTTTTCAAAATCATACTCGTTGTCACAATTGCTCTTTTGACATCATGTTGCTTTTATTTCCTACCATGGATTGCAACCTGCAAACCCTGCCCTACTAATGAATCGGTGATCTGTCCCTCAGTAGACGAGTCCGGAGAATACAAAAGCTTTCAGTGCAAACCAGGCTACTACAATGATCTTGCTTCACTCTTCCTAAATACCAATGATGATGCTATTAGAAATCTCTTCAGCTCTAGGATAACCAAGGAGTTTCATATTTCAAGCTTGTTCATCTACTTTGGCACTATCTTCTTTCTTGGGATAGCCACTTATGGTATTGCTGTTCCATCAGGCCTCTTCATTCCTGTTATCCTAGCCGGGGCTGCATACGGCCGGCTTGTTGGGAGACTATTCGAACCGATCGTTAAGCTTGACACAGGACTATTTGCACTGCTTGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACTGTGTCCATTTGTGTCATATTGCTTGAGCTCACAAATGACCTCTTATTACTTCCTCTTGTGATGCTGGTTTTATTGATATCGAAATCTGTGGCCGATGGCTTCAACAAGGGTGTCTATGACCAAATTCTGAAGATCAAAGGACTTCCTTATATGGAGTCTCATGCAGAACCTTATATGAGGACTTTGGCTGCGAGAGACGTTGTCTCAGGTCCATTAGTAACCTTCTCCGGCATAGAAAAGGTTGGGAATATACTTCATGCTTTGGAAACTACAGGACACAATGGTTTTCCTGTGATTGATGAACCACCTTTCTCAGATGCAGCAGAGTTGTGTGGACTTGTTCTGAGGTCTCATTTGCTAGTGTTGCTTAAGGGGAAGAACTTCACAAAGGATAGACTGTTCATGGACCGTAGCATCTCGAAACGAATTTCTGCATTGGATTTTGCAAAGGCTGGATCAGGGAAGGGAATGAAACTAGAGGATCTTGATATCAATGAGGAAGAGAAGAACATGTATGTTGATCTTCATCCCATAACTAATGCATCACCGTACACAGTGCTCGAGACAATGTCACTTGCCAAAGCTGCCATTCTCTTCCGCCAACTCGGACTTAGGCACATGTGTGTTGTCCCAAAGAGCCAAGGGAGACCACCGGTTGTTGGGATTCTAACGCGCCACGACTTCATGCCGGAGCATATTTTGGGACTATACCCTGGAATCAATCCTCACAAAGAGGACTGA 2367 0.4428 MENKQDGVSNGDGDGLHDIENEGVLLDGKGEIRRNWSEFSERNMSYAEPLLVKRTNTTSQIAIIGANLSPIESLDYEIFENEIFNQDWRSRKKIQIIQYVILKWGFALIIGLGTGLVGLFNNISVENIAGFKLLMTTTLMTQHRYLEAFVAYAGINVVLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIANLLGQGGSRKYGLTWNWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAAIQLCATGKCGLFGEGGLIMYDVGSSKVTYSAGDVLAAILLGVIGGVLGSVYNYLVDKVIRTYSIINEKGAVFKIILVVTIALLTSCCFYFLPWIATCKPCPTNESVICPSVDESGEYKSFQCKPGYYNDLASLFLNTNDDAIRNLFSSRITKEFHISSLFIYFGTIFFLGIATYGIAVPSGLFIPVILAGAAYGRLVGRLFEPIVKLDTGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLISKSVADGFNKGVYDQILKIKGLPYMESHAEPYMRTLAARDVVSGPLVTFSGIEKVGNILHALETTGHNGFPVIDEPPFSDAAELCGLVLRSHLLVLLKGKNFTKDRLFMDRSISKRISALDFAKAGSGKGMKLEDLDINEEEKNMYVDLHPITNASPYTVLETMSLAKAAILFRQLGLRHMCVVPKSQGRPPVVGILTRHDFMPEHILGLYPGINPHKED 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03664 788 Gene3D - 594 776 IPR046342 -
Aip05g03664 788 MobiDBLite consensus disorder prediction 1 20 - -
Aip05g03664 788 SMART cbs_1 613 666 IPR000644 -
Aip05g03664 788 SMART cbs_1 724 775 IPR000644 -
Aip05g03664 788 SUPERFAMILY Clc chloride channel 81 595 IPR014743 -
Aip05g03664 788 CDD CBS_pair_voltage-gated_CLC_euk_bac 606 773 - -
Aip05g03664 788 SUPERFAMILY CBS-domain pair 596 771 IPR046342 -
Aip05g03664 788 Gene3D Clc chloride channel 94 593 - -
Aip05g03664 788 Pfam Voltage gated chloride channel 160 574 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip05g03664 788 PRINTS Chloride channel signature 172 189 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip05g03664 788 PRINTS Chloride channel signature 203 222 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip05g03664 788 PRINTS Chloride channel signature 267 286 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip05g03664 788 PRINTS Chloride channel signature 492 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip05g03664 788 PRINTS Chloride channel signature 524 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip05g03664 788 PRINTS Chloride channel signature 542 561 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip05g03664 788 PRINTS Chloride channel signature 580 594 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip05g03664 788 Pfam CBS domain 724 770 IPR000644 -
Aip05g03664 788 ProSiteProfiles CBS domain profile. 720 787 IPR000644 -
Aip05g03664 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 37 786 - -
Aip05g03664 788 CDD ClC_6_like 72 593 - -
Aip05g03664 788 PRINTS Plant CLC chloride channel signature 77 85 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aip05g03664 788 PRINTS Plant CLC chloride channel signature 288 296 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aip05g03664 788 PRINTS Plant CLC chloride channel signature 302 312 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aip05g03664 788 PRINTS Plant CLC chloride channel signature 320 327 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aip05g03664 788 PRINTS Plant CLC chloride channel signature 444 460 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aip05g03664 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 37 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03664 Aip-Chr5 144427805 144433374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03664 12 786 Ion Channels AT5G49890 72.458 0.0 1114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03664 K05016 - gmx:100809070 1207.59