Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03642 ATGAAGGCTCTACTATTATTTCTCTTTGCTATTTCTTCATCACTGTTTATGGAACCTTGTTATTCAAGCAGTGGATATTGGCCTCCTTCACCAGGATACTGGCCAAGTCACAAATTCAGGTCTATGAACTTTTACAAAGGATTTAGAAACCTTTGGGGTCCTCAACACCAAGCACTTGACAACAATAATGCATTAACAATTTGGCTTGATAGAACCTCAGGTTATGGATTCAAATCAGTTCGTCCATTTAGATCAGGTTACTTTGGTGCTTCAATTAAGCTCCACCCTGGCTACACTGCAGGAGTTATAACAGCTTTCTATCTTTCTAACAATGAAGCACACCCTGGGTTCCATGATGAAGTGGACATAGAGTTTCTTGGGACCACATTTGGAAAACCTTATACTTTACAAACAAATGTTTACATAAGAGGAAGTGGGGATGGAACGATTATAGGAAGAGAGATGAAGTTCCATTTGTGGTTTGATCCTACCAAAGATTTTCATCACTATGCTATTCTTTGGTCTCCTAAAGAAATCATATTCCTGGTGGATGATGTGCCAATAAGAAGGTACCCTAGAAAGAGTGCTTACACATTTCCACTAAGACCAATGTGGGTTTATGGTTCAATATGGGATGCATCATCATGGGCAACTGAAGATGGCAAGTACAAAGCTGATTATAGGTACCAACCTTTTGTTGCAAGGTACACAAATTTCAAGGCTAGTGGTTGCTCCGCCTATGCATCACGGTGGTGCCACCCAGTCTCAGCCTCACCATATAGGTCCGGTGGCTTGACCAGGCAACAATATTGGGCCATGAGCTTTGAGCTCCCAAAACATTCATTCACCGCAAACATGGTTTGCTTGGCTTGTTTGTTGCCCCTGTTCCTCGTTCCCATCGTCAACATCCTCCCTCTCCTCTTCGATTTTATCATGGGGAAAATCTATAGGCTTTTTGGTTGGGAGTATAGGAAACCAGAGAGGGCTCCTGCAGCATGTCCATACAAGCCTGCAGCCAAGAGGGATACTGCTAAAGTTGAGGCCGATACTGAACCAGCTCAAGTAGAACCTATTAAACCTGCAAGTGTAGATTCATCACCACGACTTCATTTCCCAAGCCTTCAGGCAGCAGCTCATCATCGTCGGTCTCCCAGTCGCCGGTCCCTGTCTCATCACGATTTTCGCCAGTCTTCACCGAATCGCACCCCCGACGGCGCTGTTTGGTCTTGCCTCTACTCTATCCTCTGCTCATCTCTCCTCCTTTGCCTCTCGGGCCTCGACGGTTCTGTGTCCGGCGGATTCCCGGCGCGCTCCTCTCTCTTCCTCTGCTCCTTGGCGGCTGTGTTTCAGACTTTCAAGATGGGTGAGGAGGTGAAAGCAATTGTTCCCGAGTCTGTGCTTAAGAAGCAGAAAAGGGAGGAGGAATGGGCCTTGAAGAAAAAGGAGGAGCTTAATGCTGCAAAGAAGAAAAGAGCTGAGAGCCGCAAGCTCATTTACCGCAGGGCAAAGCAATATGCAAATGAATACCAGGAGCAGGAAAAGCAGCTGATCCAATTGAAGCGGGAAGCAAAGCTGAAAGGTGGATTCTATGTTGATCCAGAGGCTAAGCTCCTGTTTATCATCCGTATCCGTGGTATCAATGCCATGGACCCCAAGTCAAGAAAGATCTTGCAGTTGTTGAGGTTGAGACAGATCTTCAATGGTGTCTTTCTGAAGGTGAACAAGGCCACAATGAACATGCTTCACAGGGTTGAACCATATGTGACCTATGGATACCCAAATCTGAAGAGTGTAAAAGAGCTTATTTACAAGAGGGGCTTTGGTAAGCTGAACAAGCAGAGAATTGCCCTAACCGACAATTCCATCATTGAGAAGGCACTGGGCGAACATGGAATCATCTGCATCGAAGATCTTATCCATGAGATCATAACCGTTGGATCACATTTCAAGGAAGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCATTGGGTGGCCTGAAGAAGAAGAGAAACCACTATGTTGAAGGAGGAGATGCCGGAAACAGGGAGAACTACATCAATGAGCTTATCAGGAGAATGAATTAG 2091 0.4553 MKALLLFLFAISSSLFMEPCYSSSGYWPPSPGYWPSHKFRSMNFYKGFRNLWGPQHQALDNNNALTIWLDRTSGYGFKSVRPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGTIIGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSAYTFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTNFKASGCSAYASRWCHPVSASPYRSGGLTRQQYWAMSFELPKHSFTANMVCLACLLPLFLVPIVNILPLLFDFIMGKIYRLFGWEYRKPERAPAACPYKPAAKRDTAKVEADTEPAQVEPIKPASVDSSPRLHFPSLQAAAHHRRSPSRRSLSHHDFRQSSPNRTPDGAVWSCLYSILCSSLLLCLSGLDGSVSGGFPARSSLFLCSLAAVFQTFKMGEEVKAIVPESVLKKQKREEEWALKKKEELNAAKKKRAESRKLIYRRAKQYANEYQEQEKQLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNSIIEKALGEHGIICIEDLIHEIITVGSHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03642 696 SUPERFAMILY Concanavalin A-like lectins/glucanases 67 268 IPR013320 -
Aip05g03642 696 MobiDBLite consensus disorder prediction 344 401 - -
Aip05g03642 696 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 10 236 IPR000757 GO:0004553|GO:0005975
Aip05g03642 696 Gene3D - 25 281 - -
Aip05g03642 696 Gene3D - 537 640 IPR036919 -
Aip05g03642 696 Gene3D - 641 696 IPR036919 -
Aip05g03642 696 Pfam Ribosomal L30 N-terminal domain 462 533 IPR012988 -
Aip05g03642 696 Coils Coil 495 526 - -
Aip05g03642 696 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7 278 - -
Aip05g03642 696 SUPERFAMILY Ribosomal protein L30p/L7e 537 696 IPR036919 -
Aip05g03642 696 ProSitePatterns Ribosomal protein L30 signature. 556 588 IPR018038 -
Aip05g03642 696 Pfam Glycosyl hydrolases family 16 46 228 IPR000757 GO:0004553|GO:0005975
Aip05g03642 696 TIGRFAM uL30_euk: 60S ribosomal protein uL30 463 696 IPR005998 GO:0000463|GO:0003735|GO:0022625
Aip05g03642 696 Pfam Ribosomal protein L30p/L7e 538 588 IPR016082 -
Aip05g03642 696 CDD Ribosomal_L7_archeal_euk 537 696 IPR035808 -
Aip05g03642 696 Coils Coil 467 487 - -
Aip05g03642 696 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 278 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03642 Aip-Chr5 144213357 144228940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03642 457 696 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.000 4.38e-148 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03642 K08235 - gmx:100796698 503.442