Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03637 ATGCGTCGTCATGGATTCGAGTGCCGCGCATTGGGACACCCACGTCTGGTGTGGCCCTCTCCGCGGCAGAGCCCACATCTCTTCTCCGCATGCTCAATGGCATCTATCTCATTTCAGATCCGAGTGGATACCGGCCTACCCGATGTCTTCCTCCTCATGGCTGAGTTGGGCTTCAGGcatgcaccgtaccatggagTGCCCCTGTTTTCCTTCCTTGCACGTATCTCGGATGCACTGCTCTATGTCAGAACATGCACATATCTCGGACGCAGTGTATCCGAAATGCTCTCTTGTTCATATCTCAGAATGATGGAAGAGAAAGAGAAATTAGATAGTTACAAAGTTGGATCTTTGCCTACTGTAATATATATACCTGATTTCATCACAGATAGTGAACAAAGCTTTCTTCTTAACAATATATATGGAGCCCCTGCATCAAAGTGGAAGTTGTTGAAGAATAGGAGGTTACAGAATTGGGGTGGCGTTGTCCATGAGAAGGGCCTTCTACCTCAACCATTGCCTCCATGGTTAACAAATCTTACACAAAAGATATCAGAAGAATCAGAACTATTTCCATCAGCAATCAATCATGTTCTCATCAATGAGTACTTACCTAACCAAGGCATAATGCCACATCAAGATGGTCCAGCTTACTTCCCAGTTGTAGCTATTCTTTCACTTGGATCGCCTGTCGTCATGGACTTTACACCTCATGCTAGATTTAAACTAGATCCGCAAGATGTTAATGGCAACGATTCTGATGGAGAAGATAAAAGGCTTGATGATAATTACCTCCCATTCTCTGTTCTATTGATGCCTCGCAGTCTACTGATATTCAAGGATAAGGCATACTCAGATTATTTGCATGGTATTAAAGATTGTGTGGTACAATGCTATGATGGGGCTGTAAATGAAATGGAAGCTTTGAAACACAATGAATCAGATAGACCCTATTTTGGCTCAGAGGAATCAGTGGAAACAATGGGGAAGGAAGAGAGATTGGACTTTGGGGAAAAGCAGAAATTGCCACACGTGTATCAACCAACTGAAACTGACTCCAAAGGCAAAGTGTACCATCTGTCCACTAATCAATCAGCCTGTTTGATTTCTGTCTGTCAAATCCAGCAAAGCGTGTTATTGAAGAAATTGAACAAGTCTTATTTCATGCATACGATGAAAAAGAATTCTGACCTGAGTGAGATTGGATCTGTATTCAACAACTTGGCTAAGCAGCTTGAGGAACCTGTTGACTTTGAGCTTCCAGATTCGTTTACCAAGAATAAACCTGTGCAGTATAGATCCATAAAGCGCAATATATATACTTCAAAGAAGTTTAAGAGACGGTTTGATGATGGCATATTCTGTTCTTGTACTCCTTCACCTGAATCTCCGAATGTGTGTGGTATTGATTGCCACTGTGGGGTGCTTTTATCTTGCTGTTCTTCAGCCTGTAAATGTGGGAGCTCCTGTCTCAACAAACCATTTCAGCATCGTCGGGTGAAAAAGATGAAATTAGTTCAGACTGAGAAATGTGGCTCTGGTATTGTAGCTGCTGAAGATATTAAGCGTGGGGAGTTTGTTATAGAATATGTTGGAGAAGTAATTGATGACAAAACATGTGAAGAAAGACTTTGGAACATGAAGTATCGTGGGGATTCAAACTTTTACTTATGTGAAATCAATCGAGATACTGTGATTGATGCCACATATAAGGGAAACAAATCTAGATATATCAATCATAGTTGCTGTCCCAATACCGAGATGCAGAAATGGATAGCAGATGGTGAAACCAGAATAGCCATTTTTGCTACACGAGACATTCAAAAGGGTGAACAACTCACCTACGATTACCGGTTTGTCCAATTTGGCGCAGACCAAGACTGTCACTGCGGTGCTGTTGCCTGCAGGCGTAAGCTGGGTGTCCAACCTACAAAGCCTAAAATGTCAGTTAAATGTCAGGTATATCAGAATGGAGGTTTGCAAATTGGCAGTTCTCAAGTTTTTGCGCAATCTAAAAGCTTAAAAGTTTGCATTGGGGAAGTTATTAGGATAAAACACCTTGAACATGTGAGGTTTGGGCTTATTAAATGGTTTAACAAATATTCCCAAAAACACTTGATCCTTGCTGCACTACCACTTACTTCCTTGTGTGTAGGTGAAAACTAG 2166 0.4123 MRRHGFECRALGHPRLVWPSPRQSPHLFSACSMASISFQIRVDTGLPDVFLLMAELGFRHAPYHGVPLFSFLARISDALLYVRTCTYLGRSVSEMLSCSYLRMMEEKEKLDSYKVGSLPTVIYIPDFITDSEQSFLLNNIYGAPASKWKLLKNRRLQNWGGVVHEKGLLPQPLPPWLTNLTQKISEESELFPSAINHVLINEYLPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHARFKLDPQDVNGNDSDGEDKRLDDNYLPFSVLLMPRSLLIFKDKAYSDYLHGIKDCVVQCYDGAVNEMEALKHNESDRPYFGSEESVETMGKEERLDFGEKQKLPHVYQPTETDSKGKVYHLSTNQSACLISVCQIQQSVLLKKLNKSYFMHTMKKNSDLSEIGSVFNNLAKQLEEPVDFELPDSFTKNKPVQYRSIKRNIYTSKKFKRRFDDGIFCSCTPSPESPNVCGIDCHCGVLLSCCSSACKCGSSCLNKPFQHRRVKKMKLVQTEKCGSGIVAAEDIKRGEFVIEYVGEVIDDKTCEERLWNMKYRGDSNFYLCEINRDTVIDATYKGNKSRYINHSCCPNTEMQKWIADGETRIAIFATRDIQKGEQLTYDYRFVQFGADQDCHCGAVACRRKLGVQPTKPKMSVKCQVYQNGGLQIGSSQVFAQSKSLKVCIGEVIRIKHLEHVRFGLIKWFNKYSQKHLILAALPLTSLCVGEN 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03637 721 SUPERFAMILY Clavaminate synthase-like 119 296 - -
Aip05g03637 721 SMART set_7 501 624 IPR001214 GO:0005515
Aip05g03637 721 ProSiteProfiles AWS domain profile. 450 499 IPR006560 GO:0005634|GO:0018024
Aip05g03637 721 SMART shorttest3 450 500 IPR006560 GO:0005634|GO:0018024
Aip05g03637 721 Gene3D SET domain 408 656 IPR046341 -
Aip05g03637 721 SMART PostSET_3 624 640 IPR003616 -
Aip05g03637 721 ProSiteProfiles Post-SET domain profile. 624 640 IPR003616 -
Aip05g03637 721 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 396 671 IPR025787 -
Aip05g03637 721 CDD SET_ASHR3-like 502 640 - -
Aip05g03637 721 Pfam SET domain 512 617 IPR001214 GO:0005515
Aip05g03637 721 Pfam 2OG-Fe(II) oxygenase superfamily 158 292 IPR027450 -
Aip05g03637 721 SUPERFAMILY SET domain 413 630 IPR046341 -
Aip05g03637 721 ProSiteProfiles SET domain profile. 501 618 IPR001214 GO:0005515
Aip05g03637 721 Gene3D - 111 316 IPR037151 -
Aip05g03637 721 PANTHER SET DOMAIN PROTEINS 389 675 - -
Aip05g03637 721 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 389 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03637 Aip-Chr5 144157339 144175102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03637 480 636 C2H2 Transcription Factor Family AT2G23740 36.158 2.84e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip05g03637 2OG-FeII_Oxy_2 7.5e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03637 - - ahf:112751595 1117.06