Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03601 ATGTCAATGCTTAGTGCTGGAAACAAAACTGTTTACTTATTTCATCTCTCTGAAAATGCGCATATTCTTGATGGTTGGCATAATGGCAAGTCTTGCAGGCTTCGATGGTGCAACCAGCTCTCCCCACCCGTGGAACATCGGGCCTTCACCCCCGAAGAAGACGACACTATAATCAAAGCTCATGCTCGGTTCGGTAACAAGTGGGCCACCATAGCCCGACTCCTTTCTGGCAAAACCGACAATACCATTAAGAACCACTGGAACTCCACCCTCAAACGCAAGTGCGCCTCCATGGGCCCCATCGACGATCCTCACTTCGCGCAGCCACTCAAACGCTCCATCAGCATTAGCGCCGCCGTACCCGTGTCAACGATGGTGGTGAGGTACTTGTTGCCGACGGTGATGGCGACGACGGAGGTGGCAGGCCGTGGCCCAACTCGTCCATGCCCTTCACCACTTTGA 462 0.5368 MSMLSAGNKTVYLFHLSENAHILDGWHNGKSCRLRWCNQLSPPVEHRAFTPEEDDTIIKAHARFGNKWATIARLLSGKTDNTIKNHWNSTLKRKCASMGPIDDPHFAQPLKRSISISAAVPVSTMVVRYLLPTVMATTEVAGRGPTRPCPSPL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03601 153 PANTHER MYB PROTEIN-RELATED 28 125 - -
Aip05g03601 153 Gene3D - 47 112 - -
Aip05g03601 153 Pfam Myb-like DNA-binding domain 48 90 IPR001005 -
Aip05g03601 153 SMART sant 45 93 IPR001005 -
Aip05g03601 153 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 28 125 - -
Aip05g03601 153 SUPERFAMILY Homeodomain-like 26 95 IPR009057 -
Aip05g03601 153 CDD SANT 48 91 IPR001005 -
Aip05g03601 153 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 95 IPR017930 -
Aip05g03601 153 ProSiteProfiles Myb-like domain profile. 41 91 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03601 Aip-Chr5 143673577 143676804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03601 27 141 MYB Transcription Factor Family AT4G37260 55.906 3.40e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip05g03601 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03601 K09422 - aip:107641435 322.398