Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03598 ATGGATAATACTATTGTTCTCTTCACACTAAGCTTTCTTCTTGTATCTTCAAATGGCATCATGTCACAGCAGAATTATTCAGGAAACTCAGTACTAAGTTGCAGCAACAACGACGCAGAGGGTCCTTCTTCAGATTTCCTATACACCTGCAATGGATTCCAAAAATCTTGCTTAACCTTTCTCATATTCAAATCCCAAACTCCTCACAACACCATTGCCACAATCTCCAACCTCACTTCCTCAAACCCAGAGGACCTTGCAAGGTTCAACAACGCCACTCATTCCACATTGTTCCGAACCGGCAAAGAAGTCATTGTCCCTCTCAATTGTTCTTGTCCAACCAGAGAACATGATGATGATTATGATGAGTACTATCAAGCCCAAACCACATACATTCTGCCAAAAGATCCAACATATTTTACAACAGCAAATGATGCCTTTCAGGGATTAACCACGTGCGATTCTCTCCAGCGTTACAATCCTTATGGGGTTCTTGATTTGCATCCTGGCATGGTGTTGCACGTGCCCCTCATATGCGCTTGTCCGACGGCGCGTCAAGCCGGTAGCGGCACCAAGTATTTGCTGACCTACTCGGTTAATTGGGGTGATAACGTCTCTAATATCGCAACACAGTTCCATGTCAACGCAAGTAGTATGGTTGATGCCAATGGTTTATCCTCAGAAAATGAAATGCTATATCCATTCACAATTGTCCTCATTCCATTAACAAGTGAACCCAACAGCACAATAACCAAAGTTCAAAATGGTCAACCACCTTCTCCAACTACTCTTTACACTTTTGATGAAATTAAAGAAGCACATGAGAATTTCAGTGCAAGCAACAGAATCAAAGGCTCTGTCTACCGTGGGGTATTTGGTAAGGAGAGGGAAATCATGGCGATCAAGAAGATGAATTTGGGTGCCTCTAAGGAAGTGAATTTGTTAGGAAGGATCAATCACTTCAACCTGATAAAGCTGGAAGATCCTTGCTATGTTCACAAGGCCATAAACACTGACAATATATTGTTAAATAAAGATCTAAGGGCCAAGATAGCGAATTTCACTTTGGCTAAAGAATCAGATAGAGAAGTAACAAGCTCTTGTTCTTATTACACATCACATGTTGTGGGAACTAGGGGTTATATGGCTCCAGAGTATCTTGATTCAGGGAGAGTCACATCGAAGATGGACGTGTATGCGTTCGGAGTGGTGCTGTTGGAATTGATCACTGGCAAAGATTCTATTATTGTGCAGGATGATGGAAGTGAGACGATGCTTTCATCAATCATATTGAATCTCATTGATAAAGATGATGCAGAAGAGAAACTCGGTTTGTTCATTGATCCTAGTCTCATGGGAAACAGTGAGAAGGTCTGTGCAATTCAGCTAGTTAAGCTAAGCCTAGCATGCTTGGTTGAAGAACCTTCAAGGAGACCAAACATGGCAGAAGTGGTCTCGAGTTTGCTTAGAATATATACAGAAATTGAGACAAGAACGTCACCCTGCCGCATCCATGACAGTGGAAGCACGGAGAGGTTAAATGTATAG 1548 0.4205 MDNTIVLFTLSFLLVSSNGIMSQQNYSGNSVLSCSNNDAEGPSSDFLYTCNGFQKSCLTFLIFKSQTPHNTIATISNLTSSNPEDLARFNNATHSTLFRTGKEVIVPLNCSCPTREHDDDYDEYYQAQTTYILPKDPTYFTTANDAFQGLTTCDSLQRYNPYGVLDLHPGMVLHVPLICACPTARQAGSGTKYLLTYSVNWGDNVSNIATQFHVNASSMVDANGLSSENEMLYPFTIVLIPLTSEPNSTITKVQNGQPPSPTTLYTFDEIKEAHENFSASNRIKGSVYRGVFGKEREIMAIKKMNLGASKEVNLLGRINHFNLIKLEDPCYVHKAINTDNILLNKDLRAKIANFTLAKESDREVTSSCSYYTSHVVGTRGYMAPEYLDSGRVTSKMDVYAFGVVLLELITGKDSIIVQDDGSETMLSSIILNLIDKDDAEEKLGLFIDPSLMGNSEKVCAIQLVKLSLACLVEEPSRRPNMAEVVSSLLRIYTEIETRTSPCRIHDSGSTERLNV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03598 515 Pfam LysM domain 197 241 IPR018392 -
Aip05g03598 515 Gene3D LysM domain 195 253 IPR036779 -
Aip05g03598 515 Pfam Protein kinase domain 332 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g03598 515 ProSiteProfiles Protein kinase domain profile. 181 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g03598 515 CDD LysM 196 240 IPR018392 -
Aip05g03598 515 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 264 330 - -
Aip05g03598 515 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 4 258 - -
Aip05g03598 515 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 264 330 - -
Aip05g03598 515 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 328 499 - -
Aip05g03598 515 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 4 258 - -
Aip05g03598 515 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 328 499 - -
Aip05g03598 515 SUPERFAMILY LysM domain 195 241 IPR036779 -
Aip05g03598 515 ProSiteProfiles LysM domain profile. 195 240 IPR018392 -
Aip05g03598 515 SUPERFAMILY Protein kinase-like (PK-like) 259 496 IPR011009 -
Aip05g03598 515 Gene3D Transferase(Phosphotransferase) domain 1 322 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03598 Aip-Chr5 143617881 143619829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03598 328 491 Receptor kinase-like Gene Family AT2G23770 37.195 1.33e-22 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Aip05g03598 Pkinase 4.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03598 - - aip:107641252 521.546