LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip05g03597	ATGAAAATCTCAAAACCTTCATTCTACTCTCATACTCTGACTTTGTTCTTCTTCATCATCATGATTATGATGAGTCATGTTGCAAACTCTCAGTCTCATCAGCTCTATGATGAAGAACATGCAGTTCTTATGAAGATAAAACAGTACCTTCAAAACCCACCATTTTTAAGCCACTGGACACAGCAATCATCAACTTCCAATAACAACCACTGTTCTTGGCCTGAAATAAACTGCACCACCAATGGCAATTCTGTCATTTCACTCACTCTCTCCAACTCCAACATCACAAAAGCCATACCAACCTTCATTTGTGAACTCAAGAACCTCACTTTTCTTGACTTCAGCTTCAACTTCATCCCTGGTGAGTTCCCAACATCACTATACAATTGTTCAAAGCTTCAGTACCTTGATCTTTCAATGAACAATTTTGTTGGCAACATTCCTGATGATATGCACAGTTATTTATCTGAATTGAGGTACCTTAATCTTGGTTCTACCAATTTCACTGGTGATATTCCTTCTAGTATTGGAAGGTTAAAGGAACTGAGAGAGCTTAAGCTTCATTATTGTTATTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACCATATTGTACCTTTTCCAGAACAATCTCTCCGGAGAGATACCTAAAGTTGTTGAAGCATTGAATTTGGTTGATCTTGATCTTGCACAGAATAACCTCACAGGGAAAATTCCAGAAGTTCTTGGAAAGCTTATGAACATTACTTGGTTGAACTTGTCACTTAATAAGTTGTCAGGGGAGATTCCAGAAGCCTTCGGTAGTCTTCCAGCTATGGTGGATTTTCGCATGTTCTCCAACAATTTGTCAGGTACTCTTCCATCCGAATTCGGCCGCTACTCGAGGCTTGAAACCTTTCTGGTTTCATCTAATAGTCTTAGTGGAAATTTACCAGAGAATTTATGTTACAATGGCAGGTTACTTAATTTAACTGTTTATGACAATAATCTTAGTGGTGAGTTGCCAAAATCACTAGGAAATTGTAATAGCCTACTTGATCTGAAAATTTACAACAATAAGTTTTCTGGTAACATTCCTAGTGGTCTTTGGACATCTTTGAATTTGTCAAATTTCATGGTGAGCCATAACAATTTCACTGGTGAGCTTCCTGAGATGCTGTCCTCTAGCATTTCGCGGCTCGAGATAAGTTACAATCAACTTTCTGGTAGAATTCCAGCTACTGTGTCTTCTTGGACTAATGTGGTAGTGTTTGATGCAAGTAAGAACAACTTGAATGGAAGCATTCCACAAGAGCTAACTTCTCTTCCAAAGTTAACTACCCTATTGCTTGATCAGAACCAGCTCACTGGGCCGCTTCCTTCGGACATAATCCATTGGGAGAATCTAGTGACTCTGAATTTGAGACAGAACAAGCTCTCTGGACAAATACCAGATGCACTCGGCCGGTTGCCGGTGCTTAGCCAGCTTGACCTTTCAGAAAATCAATTCACTGGCCAAGTTCCTTCTCAGCTTCCAAGACTCACCAATCTCAATCTTTCTTCCAATCATTTGACAGGAAGAGTTCCGAATGAATTCGAAAATTCTGCCTTTGACACCAGCTTTTTGGACAATCCTGGCCTTTGTTCTGATACTCCGGAACTGAACCTTGCATTGTGTAATTCTACTCCACAAAGATCAGGCAAGGGTTCATCTTGGTCTGTTTCTTTGATTACAAGTCTTGTTGTAGCAGCCTTCTTAATGGCTTTGTTGGCAACTCTCTTGATTATGAGGCTTTACAGAAAAAGAAAGCAAGAATTTGATAACTCATGGAAGCTAATTTCATTTCAAAGGCTGAATTTCACAGAATCAGACATTCTCTCCTCATTAACTGAGCAGAATATTATTGGCAGTGGTGGATATGGTGCAATTTATCGTTGCCCTGTCGATGATTTCGGCTATGTTGCTGTGAAAAAGATTTGGAATGACAGAAAGTTAGATCAGAAGCTCAAGAGCTCGTTTCGCGCTGAAGTTAATGCGCTGAGCAATATTCGCCATACCAACATTGTGAGGTTGTTGTGCTGCATTTCAAATGAGGAATCTATGCTCCTTGTTTACGAGTATATGGAAAATAGTAGCCTAGATAAGTGGCTGCACAAGAAGTATAATAAGGCCTCCAATTTCTCAAGTTCAGCAGTGCATCATGTTTTTCTTGATTGGCCAAAGAGGTTGCAAATAGCAATAGGAGTTGCACAAGGTTTGAGCTACATGCACCATGATTGCTCACAACCTATTGTTCATAGAGATGTGAAAACAAGCAACATTCTCTTGGATGCTCAATTCAATGCAAAAGTTGCAGATTTTGGTCTGGCTAGGATGTTGCTCAAGCCTGGTCAATTGAACACCATGTCAACTGTGATTGGATCATTTGGCTACATTGCTCCTGAATATACTCAAACAAGAAGGATCACTGAAAAGATTGATGTGTTTAGCTTTGGTGTTGTTCTGTTGGAGCTAACAACTGGCAAAGAGGCGAATGATGGAGACCAACACTTGTCTCTGGCCGAGTGGGCGTGGCGCCACATTCAGATAGGAAGCAACATAGAAGAGCTTCTAGACAAAGATGTCATGGAACCAAGCTACTTGGATGAAATGTGCACAGTTTTCAAACTTGGGGTGATGTGTACTTCAACATTGGCTTCTACTAGGCCTTCCATGAAGGAGGTGCTGCAAATGTTGCAACTCTGCAGAGATCAATTTGATTATGGAGGAGACAGTAAGTTAGGCCATTATGATGTTGTTCCTCTTCTTAAGGATTCAAAAAGTGAAACAAGGTTGGATGTTGTTGATACTTTATAA	2886	0.3919	MKISKPSFYSHTLTLFFFIIMIMMSHVANSQSHQLYDEEHAVLMKIKQYLQNPPFLSHWTQQSSTSNNNHCSWPEINCTTNGNSVISLTLSNSNITKAIPTFICELKNLTFLDFSFNFIPGEFPTSLYNCSKLQYLDLSMNNFVGNIPDDMHSYLSELRYLNLGSTNFTGDIPSSIGRLKELRELKLHYCYFNXXXXXXXXXXXXXXXXXXXXXXXXLTILYLFQNNLSGEIPKVVEALNLVDLDLAQNNLTGKIPEVLGKLMNITWLNLSLNKLSGEIPEAFGSLPAMVDFRMFSNNLSGTLPSEFGRYSRLETFLVSSNSLSGNLPENLCYNGRLLNLTVYDNNLSGELPKSLGNCNSLLDLKIYNNKFSGNIPSGLWTSLNLSNFMVSHNNFTGELPEMLSSSISRLEISYNQLSGRIPATVSSWTNVVVFDASKNNLNGSIPQELTSLPKLTTLLLDQNQLTGPLPSDIIHWENLVTLNLRQNKLSGQIPDALGRLPVLSQLDLSENQFTGQVPSQLPRLTNLNLSSNHLTGRVPNEFENSAFDTSFLDNPGLCSDTPELNLALCNSTPQRSGKGSSWSVSLITSLVVAAFLMALLATLLIMRLYRKRKQEFDNSWKLISFQRLNFTESDILSSLTEQNIIGSGGYGAIYRCPVDDFGYVAVKKIWNDRKLDQKLKSSFRAEVNALSNIRHTNIVRLLCCISNEESMLLVYEYMENSSLDKWLHKKYNKASNFSSSAVHHVFLDWPKRLQIAIGVAQGLSYMHHDCSQPIVHRDVKTSNILLDAQFNAKVADFGLARMLLKPGQLNTMSTVIGSFGYIAPEYTQTRRITEKIDVFSFGVVLLELTTGKEANDGDQHLSLAEWAWRHIQIGSNIEELLDKDVMEPSYLDEMCTVFKLGVMCTSTLASTRPSMKEVLQMLQLCRDQFDYGGDSKLGHYDVVPLLKDSKSETRLDVVDTL	961

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip05g03597	961	SMART	serkin_6	639	924	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip05g03597	961	SUPERFAMILY	RNI-like	216	552	-	-
	Aip05g03597	961	Pfam	Protein kinase domain	641	920	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip05g03597	961	Gene3D	Ribonuclease Inhibitor	36	200	IPR032675	-
	Aip05g03597	961	Gene3D	Transferase(Phosphotransferase) domain 1	718	936	-	-
	Aip05g03597	961	SUPERFAMILY	L domain-like	38	195	-	-
	Aip05g03597	961	Gene3D	Phosphorylase Kinase; domain 1	625	717	-	-
	Aip05g03597	961	PANTHER	LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN	217	954	-	-
	Aip05g03597	961	PANTHER	LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN	16	194	-	-
	Aip05g03597	961	ProSiteProfiles	Protein kinase domain profile.	639	924	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip05g03597	961	Pfam	Leucine rich repeat	132	190	IPR001611	GO:0005515
	Aip05g03597	961	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	217	954	-	-
	Aip05g03597	961	ProSitePatterns	Protein kinases ATP-binding region signature.	645	668	IPR017441	GO:0005524
	Aip05g03597	961	Gene3D	Ribonuclease Inhibitor	218	566	IPR032675	-
	Aip05g03597	961	SUPERFAMILY	Protein kinase-like (PK-like)	632	926	IPR011009	-
	Aip05g03597	961	Pfam	Leucine Rich Repeat	523	544	IPR001611	GO:0005515
	Aip05g03597	961	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	774	786	IPR008271	GO:0004672\|GO:0006468
	Aip05g03597	961	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	16	194	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip05g03597	Aip-Chr5	143546911	143550105	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip05g03597	39	923	Receptor kinase-like Gene Family	AT5G25930	46.548	0.0	810

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Aip05g03597		Pkinase	8.7e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip05g03597	-		-	aip:107641433	1817.36