Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03535 ATGTCTTCTTCCGGCGGCGTCACCTCCGGCAACCCCCAGCAATACTTCTGCCACCAGTGCAACCGCACAGTCTCCATCGTCCCTTCTTCCTCCGAGCTCCTCTGCCCTAATTGCAACGAAGGCTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAACCTCATCAATCCTTTCTTCTCTTTCAACTCTGACTTCGCCGGAGGTCCCTCCGCCGGAAACCTCCCATTCTTATTCTCCGGTGGTGGCGACGATCTATCCACGCTGCTTGGCGGCGGCGGCGTTGGTAACACCGCCGCCTCCGGCGAAGCCTTTAACCCCTTTGTGTTCCTCCAGAACTACCTCCAAACCCTAAGAGCTGGCGGCGCCAACGTCCAGTTCGTGATCGAGAATTCCGGCGACCCTACAACCGGAACGTTCCGGTTTCCCGGCGGGAACATGACTCACGGCGATTACTTCTTCGGCCCGGGGCTCGAGGAGCTGATCCAGCAGCTGGCGGAGAACGATCCGAATCGGTACGGGACGCCGCCAGCATCGAAGTCAGCCGTGGAGGGGCTGCCGGACGTGTCGGTCACAGAGGAGCTGCTGGAATCGGATTCTTCTCAGTGCGCGGTGTGCAAGGACACCTTCAAGCTTTGCGAATCGGCGAAGCAGATCCCGTGGTTTCTTTGCCGTGGCCGTTTAGGCAATTCGGTGGCTCTCCTGCGGAGACGAGCAATGTTGGGAACAACAGCAACAACAACAGTGGCGGCGGCAACAACAACAGTGGGCAATCGAATTCCGAAAGTAGGGGGAATCGGAATTTTGAGTCGGAGACGAGACAAGAAGATCTTGATTGAGAGCGACTTGTGTTTCATAATGTATGAAGAGTGTTTCAAATCTGCAGCCTTGTTTAATAGAAATGATCTTAAATGTCAATCAGTGAATGGTGACAGTTGCAAGTGTTATGTTCCATGA 957 0.5475 MSSSGGVTSGNPQQYFCHQCNRTVSIVPSSSELLCPNCNEGFLEELETPIPNPNLINPFFSFNSDFAGGPSAGNLPFLFSGGGDDLSTLLGGGGVGNTAASGEAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPTTGTFRFPGGNMTHGDYFFGPGLEELIQQLAENDPNRYGTPPASKSAVEGLPDVSVTEELLESDSSQCAVCKDTFKLCESAKQIPWFLCRGRLGNSVALLRRRAMLGTTATTTVAAATTTVGNRIPKVGGIGILSRRRDKKILIESDLCFIMYEECFKSAALFNRNDLKCQSVNGDSCKCYVP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03535 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 220 - -
Aip05g03535 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 8 220 - -
Aip05g03535 318 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03535 Aip-Chr5 142695645 142698888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03535 150 220 C3H Transcription Factor Family AT5G01980 45.070 8.04e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03535 - K11982 gmx:100784504 266.159