Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03530 ATGCCTCTGCAATCTTCCTTCTCCTCCTTTTCCACCCATTCTTCTACTTCTTCCTTCGGCTATGCAtgggaatatgatgtgtttattagtttcagaggcgaagatactcgctatggtttcactggcaacctctacaaagctctttttgataaaggagtccacaccttcattgatgatgaggagcttcaaagaggagaccaaatcacaccctcacttctcaaggcaattgaagagtccaggattgccatcattgttctctctcctaactatgcttcttcttctttttgcttagacgagcttgtccacatccttcactgcatcaagggaaatcatcggctggttttaccggttttctatgaggttgatccttcggatgtgtgccatcaaagaaatagtttcggagaagcaatggccaagcatgaagagaaattcaagagtgacttgaacaaggtgcacaaatggaagcaggctctgcatcaagtagctaatttgtcaggATATCATTTCAAACACGGGGATGGATATGAACACATGTTTATTGGAAACATTGTGGTAAACATCTCAAAAAGGATTAGAAGACGTGCAGCTTTGCCTGTTGCTGATCACCCTGTTGGATTGGAGTCCCCGGTGTCAAAGGTAGCTTCCcttctagatgttgaatctaatgctggggttcacatggtggggatatatggaattggaggaataggaaaaacaacaattgctcttgccgtctataacttgattgctgaccattttgaaggtgtgtgctttcttgaaaatgtgagagaaaattcaaacaaatacgggttggtacatcttcaaaatatccttctttgcaagatattaggaaatgaaggagtcgagatattaggtgttaaagaaggaaccacacagatacaacgaaggctttgtcgaaagagtattcttttgattgtagatgacgttgatgagcatgagcagttgaaagctattgctggaaaccctgattggtttggttctggcagcagaatcattattacagcacgggacaaacatttgttagcacttcatggtgttgaaaggacatacgaggtacaaggtttaaatgaggaagagtccttagaattgcttaaatggaaagctttcaaaacagatattgttaacccaaggtacgcagatgttttaacccgtgcagtaacttatgcttctggactcccattggctttggaagtaataggttctaacttgtttggaaaagatttacaacaatgggaatctgcaatggatcaatatgaaaaagttcttgatagcaaaatacgtaagatacttcaggtaagttttgatgcattgggaaaagatgtacaaagtgtttttctggatattgcttgttgttttaaaggatataatctaatggaagtaataagtctacttcaagctcattatgggaattgcatgagatatcatattggagtgttggttgaaaaatctctcataaagatcgataagaatgatagagtgataatgcatgatctaacagaagatatgggtaaagaaattgttctagaaaagtcaccaaaacaacccggaaagtgtagtaggttatggtttcatgaagatataGTAAAAATTTTAGAAGGCAATCAAGGGACTAGTGCCATTGAAATCATACATTTGGAATTTCCGTTATTCAAAGGTGAAGTGAAATGGGATGGAACAGCTTTTGAACAGATGAAAAATCTCAAAATACTTATCATAAAAAATGGTCGTTTTTCCAAAGGGCCCAAATATCTTCCAAATAGTTTAAGAGTATTGGAATGGAGGAGGTATCCTTCAAAGTATTTTCCCTCTAATTTTGATCCAGAAAAGCTTTCCATACTCAAGTTGCCTGATTCTCTCTGCATGTCACCCAAGTTGGATAGCTTATCCAAGATGTCGATCACCTTAAAAGTTTTGAATTTTGATTACAGTGATTCTTTGAAAGAGATACTTGATGTGTCTAATCTTCAAAATGTAGAAGAATTTTCTTTTGAAGGATGTAGTAATTTAGTCTCAGTTCACAGTTCAGTTGGTTTTTTACCTAAACTTAAAATATTGAATGCTAAAAGGTGCCCCAAGCTCAGAAGTTTTCCTCCGGATATTAATTTGACCTCACTGGAAACACTCGGTCTATCTGGATGCTCAAGCCTTGAGAAATTTCCAGAAATTCCAGAAAAGATGGAAAATCTAGAAGTGCTTGATTTGAGTGACAATGGCATAAAAGATTTGCCATGTTCATTTTGTAACCTTTCTAGATTGCAGCGTTTGTATTTGAGGGTTAATGAAATGTATAGAATACCAAGTGTCATTGGCATGATGCCACGCCTGTATGCGTGTGATATTGAGTTAAGAGGAAATAAGGGGAGG 2385 0.1577 MPLQSSFSSFSTHSSTSSFGYAWEYDVFISFRGEDTRYGFTGNLYKALFDKGVHTFIDDEELQRGDQITPSLLKAIEESRIAIIVLSPNYASSSFCLDELVHILHCIKGNHRLVLPVFYEVDPSDVCHQRNSFGEAMAKHEEKFKSDLNKVHKWKQALHQVANLSGYHFKHGDGYEHMFIGNIVVNISKRIRRRAALPVADHPVGLESPVSKVASLLDVESNAGVHMVGIYGIGGIGKTTIALAVYNLIADHFEGVCFLENVRENSNKYGLVHLQNILLCKILGNEGVEILGVKEGTTQIQRRLCRKSILLIVDDVDEHEQLKAIAGNPDWFGSGSRIIITARDKHLLALHGVERTYEVQGLNEEESLELLKWKAFKTDIVNPRYADVLTRAVTYASGLPLALEVIGSNLFGKDLQQWESAMDQYEKVLDSKIRKILQVSFDALGKDVQSVFLDIACCFKGYNLMEVISLLQAHYGNCMRYHIGVLVEKSLIKIDKNDRVIMHDLTEDMGKEIVLEKSPKQPGKCSRLWFHEDIVKILEGNQGTSAIEIIHLEFPLFKGEVKWDGTAFEQMKNLKILIIKNGRFSKGPKYLPNSLRVLEWRRYPSKYFPSNFDPEKLSILKLPDSLCMSPKLDSLSKMSITLKVLNFDYSDSLKEILDVSNLQNVEEFSFEGCSNLVSVHSSVGFLPKLKILNAKRCPKLRSFPPDINLTSLETLGLSGCSSLEKFPEIPEKMENLEVLDLSDNGIKDLPCSFCNLSRLQRLYLRVNEMYRIPSVIGMMPRLYACDIELRGNKGR 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03530 795 Gene3D Ribonuclease Inhibitor 560 731 IPR032675 -
Aip05g03530 795 Gene3D Ribonuclease Inhibitor 732 793 IPR032675 -
Aip05g03530 795 SMART LRR_typ_2 733 755 IPR003591 -
Aip05g03530 795 SMART LRR_typ_2 756 779 IPR003591 -
Aip05g03530 795 Gene3D - 189 354 IPR027417 -
Aip05g03530 795 Coils Coil 415 435 - -
Aip05g03530 795 ProSiteProfiles Leucine-rich repeat profile. 735 757 IPR001611 GO:0005515
Aip05g03530 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 455 IPR027417 -
Aip05g03530 795 Pfam Leucine rich repeat 711 767 IPR001611 GO:0005515
Aip05g03530 795 SMART till_3 24 164 IPR000157 GO:0007165
Aip05g03530 795 PRINTS Disease resistance protein signature 396 410 - -
Aip05g03530 795 PRINTS Disease resistance protein signature 227 242 - -
Aip05g03530 795 PRINTS Disease resistance protein signature 707 723 - -
Aip05g03530 795 PRINTS Disease resistance protein signature 303 317 - -
Aip05g03530 795 Gene3D - 361 445 IPR042197 -
Aip05g03530 795 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 167 IPR035897 -
Aip05g03530 795 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 27 785 - -
Aip05g03530 795 SUPERFAMILY L domain-like 568 784 - -
Aip05g03530 795 Pfam TIR domain 25 188 IPR000157 GO:0007165
Aip05g03530 795 Pfam NB-ARC domain 207 442 IPR002182 GO:0043531
Aip05g03530 795 SMART AAA_5 224 362 IPR003593 -
Aip05g03530 795 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 785 IPR044974 GO:0006952
Aip05g03530 795 Gene3D - 21 188 IPR035897 -
Aip05g03530 795 SUPERFAMILY "Winged helix" DNA-binding domain 431 538 IPR036390 -
Aip05g03530 795 ProSiteProfiles TIR domain profile. 23 191 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03530 Aip-Chr5 142526324 142569902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03530 19 764 WRKY Transcription Factor Family AT4G12020 31.380 7.77e-82 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03530 - - aip:107644584 1411.36