Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03529 ATGGCACTCCACTCTTCTTCCATAAGCTATGCAtggaaataccacgtcttcattagcttcagaggcgaagatactcgttacggttttactggctatctttatgaagctctttctaataaaggaatccacaccttcattgatgatgaggatcttccaaaaggagatgaaatcacaccctcacttctcagctcaattcaagagtctaggattgccatcattgtgctctctcctaactatgcttcttcttctttctgcttagatgagcttgtcgagatccttcactccgtcaagggaaataattggttggttttgccggttttctataaggttgatccttctgatgtgcgccgtcaaacaaacagttttggagaagcaatggctaaacatgaggagacattcaagaatgacttgaacaaggtgaaaaaatggaaggaggctctgcatcaagtggctaatttgtctggctATCATTTCAAACATGGGGTTGGATATGAACATAAGTTTATTAGAATTATTGTGGAAGAAATTTCAAGAAAGATAAGGCGTGAATCTTTGCCTGTTGCTGATTACCCCGTCGGACTAGATTCTCGAGTATCAGAAGTAATTTCACTTTTGGAAATTGAATCTAATGATGCCGTGCATATGGTAGGAATACATGGAGTTGGTGGAATAGGAAAAACAACACTTGCTCTTGCAGTTTATAACTTGATTGCTGATCATTTTGAAGGTGTGTGCTTTCTTGAAAGCATCAGAGAAAATTCAAATAAATATGGGTTGGTATATCTTCAAAATATCCTTCTTTCTCAGATATTAGGAAAGGAGAAAGTTCAGATTGTAGGTGTTAGACAAGGAGCTCCACAAATAGAACAAAGACTTTGTCGAAAGaaggttcttttggttctggatgatgttgatgaacaagagcagttaaaagctgttgctgaaaaacctgaacggtttggttgtggtagcagagtcattattacaacacgggacacacatttgctaaaactccatcgtgttgaaaggatatacgaagtacaaggtttaaataagaaagagtcaattgatttgcttacttggaaagcttttaaaattgatactgttagtccaagttacacaaatattttaactcgtgtagtaacttatgcttctggacttccattgactttggaagtaataggttctaacttgtttggAAAAGATTTAAAACAATGGGAATCTGCATTAGATCAATATAAAAAAAGTCTCCATATGGTGGGATATCCTTCAAAGTATTTGCCATATGATTTTCAACCAAAGGAACTCTCCATACTCAAGTTGCCCTATGATTTCTCTGTGTCAACCAAGTTGGATAACTTATTTAAGAACTTTGTTAAGTTGAAAGTTTTGAACTTTGATTGCAAGAATTCTTTGAAAGAGATACCTGATGTGTCTAGCCTTCAAATGTTGGAAGAATTATCGTTTAAAAAGTGTCCTAATTTAGTTACCGTTCACAGTTCGTTGCCCGCACTCAAAAACCTCTATCTGTATGGTTGCTCAAGTCTCGAGTATTTTCCAGAAATAGCCGAAAGGATGGAAAATGTAACCCTGCTTGATTTGGATGACACTGGGATAAATGATTTGCCAGATTCATTTTGTAACCTTCTTAGGTTGTGGCAGTTGAAAATGAATGGGAATAAAATGTGCACGATACCAAATGTCATTTTCCTGATGCCACGATTGTATTTGCTTGATATCCCCAAAACTGAAGGAGGGGATTCAAGGAATTTCGACTGA 1779 0.2108 MALHSSSISYAWKYHVFISFRGEDTRYGFTGYLYEALSNKGIHTFIDDEDLPKGDEITPSLLSSIQESRIAIIVLSPNYASSSFCLDELVEILHSVKGNNWLVLPVFYKVDPSDVRRQTNSFGEAMAKHEETFKNDLNKVKKWKEALHQVANLSGYHFKHGVGYEHKFIRIIVEEISRKIRRESLPVADYPVGLDSRVSEVISLLEIESNDAVHMVGIHGVGGIGKTTLALAVYNLIADHFEGVCFLESIRENSNKYGLVYLQNILLSQILGKEKVQIVGVRQGAPQIEQRLCRKKVLLVLDDVDEQEQLKAVAEKPERFGCGSRVIITTRDTHLLKLHRVERIYEVQGLNKKESIDLLTWKAFKIDTVSPSYTNILTRVVTYASGLPLTLEVIGSNLFGKDLKQWESALDQYKKSLHMVGYPSKYLPYDFQPKELSILKLPYDFSVSTKLDNLFKNFVKLKVLNFDCKNSLKEIPDVSSLQMLEELSFKKCPNLVTVHSSLPALKNLYLYGCSSLEYFPEIAERMENVTLLDLDDTGINDLPDSFCNLLRLWQLKMNGNKMCTIPNVIFLMPRLYLLDIPKTEGGDSRNFD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03529 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 418 IPR027417 -
Aip05g03529 592 Pfam NB-ARC domain 197 416 IPR002182 GO:0043531
Aip05g03529 592 PRINTS Disease resistance protein signature 215 230 - -
Aip05g03529 592 PRINTS Disease resistance protein signature 291 305 - -
Aip05g03529 592 PRINTS Disease resistance protein signature 500 516 - -
Aip05g03529 592 PRINTS Disease resistance protein signature 384 398 - -
Aip05g03529 592 Gene3D Ribonuclease Inhibitor 431 585 IPR032675 -
Aip05g03529 592 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Aip05g03529 592 Gene3D - 349 430 IPR042197 -
Aip05g03529 592 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 419 580 - -
Aip05g03529 592 ProSiteProfiles TIR domain profile. 12 184 IPR000157 GO:0007165
Aip05g03529 592 Gene3D - 10 176 IPR035897 -
Aip05g03529 592 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 16 416 - -
Aip05g03529 592 SMART AAA_5 212 350 IPR003593 -
Aip05g03529 592 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 419 580 IPR044974 GO:0006952
Aip05g03529 592 Pfam TIR domain 13 179 IPR000157 GO:0007165
Aip05g03529 592 Gene3D - 177 344 IPR027417 -
Aip05g03529 592 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 416 IPR044974 GO:0006952
Aip05g03529 592 SMART till_3 13 153 IPR000157 GO:0007165
Aip05g03529 592 SUPERFAMILY L domain-like 415 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03529 Aip-Chr5 142479508 142481933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03529 417 580 WRKY Transcription Factor Family AT4G12020 27.919 2.14e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03529 - - aip:107644581 899.042