Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03498 ATGTCTTCAGCATCATCAAGTAGTGCCGATAATAATGCATGGACTGTTGAGGAGAACAAAGCTTTTGAAAGGGCAATAGCTGCATATGACAAGAACAATCCTGAACGTTGGAACAATGTTGCTAAGGTTGTTGGCAATGGAAAAACTGCAGAACAAGTGAAGAAGCACTATGAGCTTCTTGTCCAAGACATTCAACTTATTGAGTCCGGCCAAATTCCATTTCCAAAATATAGGTCAGGGGGTAATTAA 249 0.4016 MSSASSSSADNNAWTVEENKAFERAIAAYDKNNPERWNNVAKVVGNGKTAEQVKKHYELLVQDIQLIESGQIPFPKYRSGGN 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03498 82 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Aip05g03498 82 ProSiteProfiles SANT domain profile. 9 65 IPR017884 -
Aip05g03498 82 ProSiteProfiles Myb-like domain profile. 6 61 IPR001005 -
Aip05g03498 82 CDD SANT 13 61 IPR001005 -
Aip05g03498 82 Gene3D - 4 74 - -
Aip05g03498 82 SMART sant 10 63 IPR001005 -
Aip05g03498 82 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 4 80 - -
Aip05g03498 82 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 4 80 IPR044636 GO:0003700
Aip05g03498 82 SUPERFAMILY Homeodomain-like 12 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03498 Aip-Chr5 142064208 142064456 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip05g03498 Myb_DNA-binding 2.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03498 - - zju:107403626 112.849