Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03480 ATGGCTAGCTGGGTTATTGACATTGGAGGACTTGCAAAGAAAGTGAAGAATAATACACTGCCATTAGCTGATCAAATCAATGACTGTGGAGCATATTGTGAATGTCCAATATGTCATTATCACATTGATAACATTGATGTTTCTCCTGAGTGGCCAGGCTTTCCGGCCGGCGTGAAGTTTGATCCTTCCGACGTAGAACTGTTGGAACATTTGGCAGCAAAATGTTGTGTTGGAAACAAAGTGCCTCATGCCTTTATCCAAGATTTCATCCCAACACTAGAAGGAGACCAAGGAATATGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGGCCAGTGTTCATTTCTTTCACAAAACAACTAATGCATATGCTACCGGACAACGAAAGCGTCGAAAGATTAATCATCAACTAGGCCTAAGTGAGGAGCATGTTCGCTGGCATAAGACCGGTAAGACCAAAGCTGTAACAGAAAATGGAGTACACAAGGGCTTCAAGAAGATCATGGTTCTTTACATAAGGCCTAAAAGAGGTGCAAAGCCGAATAAATCGAAATGGGTGATGCATCAGTACCATCTAGGGAATGATGAAGGTGAGAAGGAAGGTGAATATGTGGTTTCAAAGATTTTCTATCAGCAGAAGAAGAAAACTAAGAAGAATAAGCTGAATCCATTGGTGGCTGAAGATTCTGTCATGGCATTACAAGCAAGTCCAAGAACACCGAATCCAAATCCACCAAAACGGCCTCGGACAGGAAAATCTGTTGACTGTGATGACAATTTTGATGAAACTGACCTTATGCTATTCACTCAGGATGGAAAGCCTACTATTCATGGAGAATCTCTTGCCCCACCACCATCTGAAGTTCATGGTGATGAAAATAATGGAGGCTTTAACAACACTGCATTGTTATCTGTTGAAACACAACCTGTTGAAAACTCTGACTTTATTGGATTGGATGATATCTTACTATGCAAGGAACAGACATTAGATTCTTCTTCTGCTTACCTAAATGATTCTGGTTTGAAGTCCAACAATCTGAAAGGCTTTGCTTGCAATGCAAATGGAAATGCAGCTGAATTGTTTGGGGATGTGAATGATTGTTATGGAATTTCAGTGCTGGATAACCTGGGACTGGACAGTCCTCCTGATTTTGATCTTTCTGTAAGCACTCGATCACCCTTGTCGTCGTAG 1203 0.414 MASWVIDIGGLAKKVKNNTLPLADQINDCGAYCECPICHYHIDNIDVSPEWPGFPAGVKFDPSDVELLEHLAAKCCVGNKVPHAFIQDFIPTLEGDQGICYTHPENLPGAKKDGASVHFFHKTTNAYATGQRKRRKINHQLGLSEEHVRWHKTGKTKAVTENGVHKGFKKIMVLYIRPKRGAKPNKSKWVMHQYHLGNDEGEKEGEYVVSKIFYQQKKKTKKNKLNPLVAEDSVMALQASPRTPNPNPPKRPRTGKSVDCDDNFDETDLMLFTQDGKPTIHGESLAPPPSEVHGDENNGGFNNTALLSVETQPVENSDFIGLDDILLCKEQTLDSSSAYLNDSGLKSNNLKGFACNANGNAAELFGDVNDCYGISVLDNLGLDSPPDFDLSVSTRSPLSS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03480 400 SUPERFAMILY NAC domain 39 215 IPR036093 GO:0003677|GO:0006355
Aip05g03480 400 MobiDBLite consensus disorder prediction 236 259 - -
Aip05g03480 400 ProSiteProfiles NAC domain profile. 54 215 IPR003441 GO:0003677|GO:0006355
Aip05g03480 400 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 3 392 - -
Aip05g03480 400 Pfam No apical meristem (NAM) protein 55 196 IPR003441 GO:0003677|GO:0006355
Aip05g03480 400 Gene3D NAC domain 63 221 IPR036093 GO:0003677|GO:0006355
Aip05g03480 400 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 392 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03480 Aip-Chr5 141797225 141801074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03480 35 215 NAC Transcription Factor Family AT1G28470 53.763 1.78e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip05g03480 NAM 9.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03480 - - ahf:112799760 543.888