Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03465 ATGGAGAAAGTGGTTGTGGAAAACCTTTGGAATGGTGACAGAGATGCACAAATTCAAGCAGCTATGGAGCTAAGCAGATTTAGTAGTAAGCAAAGGCACAAGTTGGGAGAAAGTGGAGTCTTGGTTCCTCTGGTTTCCATGCTTCATTCTGAAGACTATGAAGCCATTGAAGCTTCTCTCTGTGCTCTACTCAGTCTTGCATTCGGCAGCGAACGAAACAAGAGAAGGATCATCAAGTGTGGAGCTTTGCCAGTTCTGCTGAATCACCTTCACTCTCAAAGCCAAACAGTGGTGCAATTGACAGTAGCAGCCATGCTAACCCTCTCATCCTGCAAGGCAAATAAGGTTGCAATTGCTTCATCCGGTGCTCTACAACACTTGGCTGAATTTGTAAATAGCGGTGACATTCAGTTACAGCTTGATGTTGTGGCCACAATCCACAACCTCTCAACCTGCGAAGAGATTGTTCCATTAATCATTGCTTCTGGCATTATACTTTCATTGCTTGAACTGGTCCACAACTCTGTGAAATCATCTCCGCTGGGTGAAAAGGCGATTGGTTTGCTCGAAAATATTGTCTCTTCATCGGAGAGTGCACTTTGTGAGGCTGCTAGTGTTGGACTGCTTCAGTTAAGCATAGATGGAACGCGGAGAGCCAAGAACATGGCTCGAGAACTGTTGTTGCTTCTGAGAGATTACTCCGATTATAGTTCAAGACAAAAACAAATGAATCATGAGCTCATAGAGCGGATCATGGAAGAAATTGATGCAGATGGAGAGAAATTGGCTGATGCTAAGCTGCGGTTAGTGGAGGAGATGATTGCAAAGCTGAACACATAA 840 0.444 MEKVVVENLWNGDRDAQIQAAMELSRFSSKQRHKLGESGVLVPLVSMLHSEDYEAIEASLCALLSLAFGSERNKRRIIKCGALPVLLNHLHSQSQTVVQLTVAAMLTLSSCKANKVAIASSGALQHLAEFVNSGDIQLQLDVVATIHNLSTCEEIVPLIIASGIILSLLELVHNSVKSSPLGEKAIGLLENIVSSSESALCEAASVGLLQLSIDGTRRAKNMARELLLLLRDYSDYSSRQKQMNHELIERIMEEIDADGEKLADAKLRLVEEMIAKLNT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03465 279 PANTHER U BOX DOMAIN-CONTAINING 1 206 - -
Aip05g03465 279 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Aip05g03465 279 SMART arm_5 152 194 IPR000225 GO:0005515
Aip05g03465 279 SMART arm_5 70 110 IPR000225 GO:0005515
Aip05g03465 279 SMART arm_5 111 151 IPR000225 GO:0005515
Aip05g03465 279 SMART arm_5 28 68 IPR000225 GO:0005515
Aip05g03465 279 SUPERFAMILY ARM repeat 4 206 IPR016024 -
Aip05g03465 279 Gene3D - 3 234 IPR011989 -
Aip05g03465 279 PANTHER U BOX DOMAIN-CONTAINING 200 259 - -
Aip05g03465 279 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 206 - -
Aip05g03465 279 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 200 259 - -
Aip05g03465 279 Pfam Armadillo/beta-catenin-like repeat 28 67 IPR000225 GO:0005515
Aip05g03465 279 Pfam Armadillo/beta-catenin-like repeat 71 105 IPR000225 GO:0005515
Aip05g03465 279 Pfam Armadillo/beta-catenin-like repeat 113 150 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03465 3 230 U-box Gene Family AT2G23140 29.487 1.74e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03465 - - gmx:100778534 374.785