Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03458 ATGGACGTTACAAAACGTAGCTCCGTCTTCACCCAAATCACTTCAAGGGAGCTCAATTCCTTCCGAGTTCGCAAACGGCCTTACATGGATGGATTCGTCACTGGATTCGTGGAACACGGTGCTGTTGGAGTTCACCACAGCGAAGATGGTACCATTCCCATGTCCCTCTCTTTCTGTAAGACTCCCAAGTTTTCACACATTCTGGCTTTATCTGATGAAGATGGATACCTAAGCTTATTTGATTCGCGTAAAAAATTCTCCGTATTATCCTCGTTTGAAGAAAATGCAGAGAAAGCGAAGATCTGTGAGTGGGTTTCGCATCTTAATGCCGTGTTTGATATCTGTTGGATTAAGGAAGACACACAGATACTCACAGCTTCTGGTGATCAGACAATGAAGGTATGGGATGTACAAGAAAAGAAATGTATTGGAGTGTTGACGGGGCACACAGGGAGTGTGAAGTCTATGTGTGCTCATCCAAATAATGCTGATATTATTGTCTCTGGTTCAAGAGATGGATCCTTTTGTCTCTGGGACTTAAGATGCAAATCGGCAACTAGGGGTAGACATGGAGAAGTTAGCATATGTTCAACGGCTGTTGTCAAAGGAGCACATCTTTCATCTCAAGCAAAACGTGTCAGAAAGGGCAAGGCCAAGTCGATGAGCATTACATCTGTTCTTTGTCTTAAGGACCAGGTTTCCATAGCCACTGCAGGGGCAGTGGATAGTGTGTTGAAGTTTTGGGATACCAGAAATTTGAAAAGTTTTGTTACACAGGCATCTCCTCGTCCTCAGTCAACAGAAAAGGAAAGATTACATGGCATATCTAGCTTGTCCCAAGATGAAAGTGGTCTTTTTCTTTCAGCATCCTGCATGGATAACTGCATTTATCTGTATAACATCCTTCAACTTGACAAGGGGCCTTTCAGATCTTTTCCTGGTTGTCCCATAGAATCATTTTTTGTCAAGGCTGCCATTAGCCCAGATGCGTCTCAAATAGTCAGTGGTTCTAGTAATGGAAATGCCTATGTCTGGCAGGTTAACAAGCCCCAAGCGACGCCTGTTATTTTGAAAAGTCATGATGCGGAGGTTACAGCAGTTGACTGGAACCACTCTGAGATTGGTAAATTAGCAACTGCATCAGATGATTGCACAGTTCGGATTTGGAACCAAACCAATTATATCTGCGACAAAAAGACTTCATGTTCCATCCGCAGAAGAGTAATGGCAATGCCTTGTACAGAAAGCAAAATTCTACTGAACAATGAAGAAAAGTATCTCAAGTCAATAGACAATGAATCATTAGATCCCCCAATTAAGTTAGCCACTCCAATCACACCACCTAAAATTCTTGCACCTGAAGGGTGGCACAAGAACAAGCTGCCCTCAGGATTCAATCAAACTTCATCATCTGAAAAGACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTGTTTTGAACCCTCCATCTTCCTTGAAAAGAACTATCCGGGACTACTTTTTGGCATCTTCATGA 1515 0.4284 MDVTKRSSVFTQITSRELNSFRVRKRPYMDGFVTGFVEHGAVGVHHSEDGTIPMSLSFCKTPKFSHILALSDEDGYLSLFDSRKKFSVLSSFEENAEKAKICEWVSHLNAVFDICWIKEDTQILTASGDQTMKVWDVQEKKCIGVLTGHTGSVKSMCAHPNNADIIVSGSRDGSFCLWDLRCKSATRGRHGEVSICSTAVVKGAHLSSQAKRVRKGKAKSMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSFVTQASPRPQSTEKERLHGISSLSQDESGLFLSASCMDNCIYLYNILQLDKGPFRSFPGCPIESFFVKAAISPDASQIVSGSSNGNAYVWQVNKPQATPVILKSHDAEVTAVDWNHSEIGKLATASDDCTVRIWNQTNYICDKKTSCSIRRRVMAMPCTESKILLNNEEKYLKSIDNESLDPPIKLATPITPPKILAPEGWHKNKLPSGFNQTSSSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03458 504 MobiDBLite consensus disorder prediction 461 491 - -
Aip05g03458 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Aip05g03458 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 390 IPR001680 GO:0005515
Aip05g03458 504 Gene3D - 41 187 IPR015943 GO:0005515
Aip05g03458 504 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Aip05g03458 504 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 2 502 - -
Aip05g03458 504 PANTHER BNAA06G31940D PROTEIN 2 502 - -
Aip05g03458 504 Pfam WD domain, G-beta repeat 105 136 IPR001680 GO:0005515
Aip05g03458 504 Pfam WD domain, G-beta repeat 356 390 IPR001680 GO:0005515
Aip05g03458 504 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Aip05g03458 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Aip05g03458 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Aip05g03458 504 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Aip05g03458 504 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Aip05g03458 504 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Aip05g03458 504 SUPERFAMILY WD40 repeat-like 56 395 IPR036322 GO:0005515
Aip05g03458 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 181 IPR001680 GO:0005515
Aip05g03458 504 Gene3D - 189 423 IPR015943 GO:0005515
Aip05g03458 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 390 - -
Aip05g03458 504 MobiDBLite consensus disorder prediction 452 491 - -
Aip05g03458 504 SMART WD40_4 350 390 IPR001680 GO:0005515
Aip05g03458 504 SMART WD40_4 305 346 IPR001680 GO:0005515
Aip05g03458 504 SMART WD40_4 97 136 IPR001680 GO:0005515
Aip05g03458 504 SMART WD40_4 265 300 IPR001680 GO:0005515
Aip05g03458 504 SMART WD40_4 209 249 IPR001680 GO:0005515
Aip05g03458 504 SMART WD40_4 139 179 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03458 107 345 U-box Gene Family AT1G04510 24.521 3.90e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03458 K11790 - gmx:100819114 711.835