Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03439 ATGGCTGCCACAGCAACTGCCTCTTCAGTTGGTCCGCGGTATGCACCACCAGACCCTACTTTACCAAAACCATGGCGCGGTCTTGTGGATGGAAAGACTGGGTATCTTTATTTTTGGAATCCTGAAACTAATGTTACCCAATATGAGCGGCCTTCGAGCTCATCTGCCTCACCTAAGTATTCTTCTTCGGTGTCTAGTTCCTCTGTCCAGGTTCAACAGTCATCTCAAGGGCAGCAGCGTGGTCGCAGTCCTGAGTTGGGTGATAGGTATGATAGGAACAGTGGAGGTGGGTCAAACAATGAAGGTGGATTGCGCAACTACCAGGATTCGAAAGGTGGAAATTTTAGTTCTCATAATGCTCCAAATGGGATGCATTCTGCTGGAAATGTTAGTTCCTCTATCAAAGGTCAAGGAGCACCAGATACTGGAGTTGGGTTATCTCCAGAGGCTTATCGGCGTCGGCATGAAATTACAGTTACTGGTGATGATGTTCCTCCACCACTTACGTCATTCAGTTCAAGTGGCCTTCCCTCTGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCTGCCCCAACTCCAATTCAGGCACAGTCGTGGCCTATTGCTCTTCAAAGTAGAGATATAGTTGCAATTGCTAAAACAGGTTCAGGGAAGACTCTGGGGTATTTAATTCCAGCATTTATTCATCTCAAGCGCACTGGTAATGATCCAAGAATGGGCCCCACAGCATTGGTACTATCACCAACAAGGGAACTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCGTCGAAAATTACTTGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGGGATATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGTTTGAATGATATTCTTGAGATGAGGAGAATTACTCTTAACCAGATTTCTTATCTAGTGCTGGACGAGGCAGACAGGATGCTGGACATGGGCTTTGAACCTCAAATTAGAAAGATTGTAAATGAGGTGCCTGCTCGTAGGCAAACTCTTATGTATACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGACCTGCTGGTCAATCCCGTTCAGGTGAACATCGGGAATGTAGATGAGCTTGTTGCTAACAAATCTATTACTCAGCATGTTGAAGTATTGACCTACATGGAGAAACAGAGACGACTGGAAAATATTTTGCGGTCACAGGATCAAGGATCTAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTGCACGCCAGTTTGGAGCTGCTGCTATTCACGGGGATAAATCCCAGTCTGAGAGGGACCATGTCTTGAATCAATTTCGGACTGGGAGGTCTCCTGTCCTTGTTGCTACGGATGTTGCAGCTCGAGGATTGGACATTAAAGACATCAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGGAGGACCGGGAGAGCTGGGGCCACTGGTTTGGCATTCACTTTCTTTGGGGAGCAGGATGCTAAACATGCTACAGACCTCATCAAAGTCTTGGAAGGTGCAAACCAGCGAGTTCCTCCTGAACTTCGGGATATGTCAGGACGGGGTGGTGGGATGAATAGATCCAGACGATGGGGTTCTTCTGGTTCTGGCCGCGGGGGACGCGGTGACTCTGGATTTGGTGGAAGGAATAATGATTCTGGATACGGTGGAAGGGGTAGTGATTCTGGATACAGTGGAAGGGGTAGTGATGCTGGATATGGTAGCAGAGTTGGCGACTCTAGTTATGGAGGAAAGGGTGGGTGGTCTGCTTCTGGCAGAGGTGGAGGTCGTGGGTCAGACTATGATTCACAGAGGAATGATCGTGCTCGGAGTCCTGACAGAGGATCTAGTTGGAGTGATCGCTTCAAAAACCGTGATCGCAGTCGTAGCCGTAGCCGTAGCCCTGTCAGGGTCCCACCAAATTCCAATGTCAGCTTTCACAAAGCAATGATGGAACGTGGTGGAGGTGATAGTGATCGCAAGGGTTTTAATCGGGACCGAAGCCGCAGTCCTGTCCCCTACAGCAAGGACCGGGCTCCCACTGGTCGCGAACGTTCCCCCCCTTACAGTTTTCATCGCTCTGTTATGGGACAAGGTCGATCATCCTCCCCATATCGACAGCAGCATGCAGAGGAAAAAGTATTAAGACGCAGTCCTAATCGAAGTTCACCATCCTCTCCTGGTGGTGGTAGATCGAACAATGGTACTCAAAAGGAGTGGGGAGGGTCTCATGGTGACGGGAAGTATGGTGGATCTTCCTATAATGGAGAAGAGGAGGAAGGCATGATACCTGATGAAGAAGGCATGATAGGTCAAGATGATGGTGTATATCAAAATGCAGACTAG 2430 0.4778 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSSASPKYSSSVSSSSVQVQQSSQGQQRGRSPELGDRYDRNSGGGSNNEGGLRNYQDSKGGNFSSHNAPNGMHSAGNVSSSIKGQGAPDTGVGLSPEAYRRRHEITVTGDDVPPPLTSFSSSGLPSEILREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRTGNDPRMGPTALVLSPTRELATQIQDEAVKFGKSSKITCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRITLNQISYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLTYMEKQRRLENILRSQDQGSKIIIFCSTKKMCDQLARNLARQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAFTFFGEQDAKHATDLIKVLEGANQRVPPELRDMSGRGGGMNRSRRWGSSGSGRGGRGDSGFGGRNNDSGYGGRGSDSGYSGRGSDAGYGSRVGDSSYGGKGGWSASGRGGGRGSDYDSQRNDRARSPDRGSSWSDRFKNRDRSRSRSRSPVRVPPNSNVSFHKAMMERGGGDSDRKGFNRDRSRSPVPYSKDRAPTGRERSPPYSFHRSVMGQGRSSSPYRQQHAEEKVLRRSPNRSSPSSPGGGRSNNGTQKEWGGSHGDGKYGGSSYNGEEEEGMIPDEEGMIGQDDGVYQNAD 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03439 809 MobiDBLite consensus disorder prediction 46 147 - -
Aip05g03439 809 SMART ww_5 20 53 IPR001202 GO:0005515
Aip05g03439 809 Gene3D - 147 378 IPR027417 -
Aip05g03439 809 SMART helicmild6 428 508 IPR001650 -
Aip05g03439 809 MobiDBLite consensus disorder prediction 747 768 - -
Aip05g03439 809 MobiDBLite consensus disorder prediction 680 711 - -
Aip05g03439 809 MobiDBLite consensus disorder prediction 628 661 - -
Aip05g03439 809 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 374 IPR014001 -
Aip05g03439 809 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 320 328 IPR000629 -
Aip05g03439 809 MobiDBLite consensus disorder prediction 1 27 - -
Aip05g03439 809 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Aip05g03439 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 524 IPR027417 -
Aip05g03439 809 MobiDBLite consensus disorder prediction 46 82 - -
Aip05g03439 809 Gene3D - 17 70 - -
Aip05g03439 809 MobiDBLite consensus disorder prediction 539 809 - -
Aip05g03439 809 CDD WW 22 51 IPR001202 GO:0005515
Aip05g03439 809 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Aip05g03439 809 Pfam DEAD/DEAH box helicase 193 363 IPR011545 GO:0003676|GO:0005524
Aip05g03439 809 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 126 639 - -
Aip05g03439 809 Gene3D - 379 549 IPR027417 -
Aip05g03439 809 Pfam Helicase conserved C-terminal domain 400 508 IPR001650 -
Aip05g03439 809 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 169 197 IPR014014 GO:0003724
Aip05g03439 809 CDD SF2_C_DEAD 388 517 - -
Aip05g03439 809 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Aip05g03439 809 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 547 IPR001650 -
Aip05g03439 809 MobiDBLite consensus disorder prediction 93 138 - -
Aip05g03439 809 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 639 - -
Aip05g03439 809 SMART ultradead3 188 391 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03439 Aip-Chr5 141194135 141200260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03439 167 546 Eukaryotic Initiation Factors Gene Family AT3G19760 33.594 3.25e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03439 K12823 - gmx:100786511 1051.58