Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03398 ATGGCACTCATCCTCGTCTCCGCCGCCGTCGCCATCCTCATGATGCACAGCGTGGCCGTCGGCGCCTCCGACACCGACCTCCTCCTCAAGTTCAAGGAGTCCCTTCAGATAAACAACGACGCCTTATCGTCATGGAATTCAACAACGCCTCCATGTAACGGAGCGAAGGCGAATTGGCCTCACATTTTGTGCTATAACGGGAACACATGGGGGATAAAGCTCGAGAGGATGGGGATCAAAGGATCCATCGATGTGGACGCCTTGAAGGGTCTACCATATCTGAGGACACTCAGTCTCATGCACAATAATCTTGAAGGCTCGTGGCCGGAGCTCAACAAATTGCCGGGATTGAAGGCGATCTATCTTTCCGATAACCATTTCTCCGGCGAGATTCCGACCGATGCCTTCGCCGGTTTGCAATGGCTGAAGAAGATTTACTTGTCCAATAACAAGTTTAGTGGTCCGTTGCCAAGTTCGTTATCCACAATGCCAAGGCTTAGAGAGCTGAGGTTGGAGGGAAACCAATTCAGTGGAAATATTCCGAGTATGCCACCGACATTGAGATCAATGAGCCTCGCTGATAATAAATTACAGGGACAAATACCTTCCGATTTGACCAAGTTTCCTCGTGCATCTTTCGCCGGTAACAAAAAGCTATGTGGAGCGCCATTACATAACAAATGTCCGTCGAATAAGACATCATTAGCGAGCATAATAGTGCTTGCTATATTTGCTGCGGTGGCAATATTTGTGATTGCAGCAGTGATAGTACTCCTTCTTCACAGGAAAAAACAGAGACAACAACGTAGAGAACCTTCTTCTTCATTCGAGAGTCCATCAATACCGTCAAGCTTCCACAAGAAAGTAGGAGATCTTTCCGATGATGGTGGTAGCCACAGGTCTTTAAGGTCAACTGGATCTTCCCGTGGAAGCAAGAAACATAGCATGAGGTTGTCATTTGTGAAGAGGGAGGATGACAGGGAAGAGTTTGATATGCAAGATCTTTTGAAGGCCTCTGCTGAGATTTTGGGCAGTGGTTGTTACAGTTCATCCTATAAGGCTTCTTTGTTAAGTGGACCAATGGTGGTTGTGAAAAGATTCAAGCAGATGAACAATTGCAATAAAGAAGAATTTCAAGAACACATGAGAAGGATTGGGATGTTGAGTCATCCTAATTTGCTTCCTTTGGTAGCTTACTACTACAGAAGGGAAGAGAAGCTCTTGATTACTGATTTTGTTCCTAATGGCAGCTTGGCTGTTCGCCTTCACGGACACCAAGCATTGGGGCAACCAAGCCTTGATTGGCCAACAAGATTAAAGATAGTGAAAGGCATATCAAAAGGTCTTGAATATCTATACAAAGAGATGCCAAGTCTAATAGCACCACATGGACATCTAAAATCATCAAATGTTCTTCTAAATGAAAACTATGAACCAGTCCTAACAGATTATGGCCTAGTGCCAGTGATTAATCAAGAGCTTGCATCAGACATTATGGTAATTTACAAGTCACCAGAGTATTTGCAACAAGGCAGAGTTACAAAGAAGACTGATGTTTGGAGCCTTGGGATCTTAATCTTGGAGATTCTAACTGGAAAATTCCCAGCAAATTTCTTGCAACAAGGGAGAGGGAGTGAATTGAGCTTAGCAAATTGGGTTGATTCAGTTGTTCCTGAAGAGTGGAGTAGTGAGGTTTTTGATAAAGAAATGAGTGCAAGCAAAGAAAATGAGGTTGAGATGGCAAAGCTATTAAGGATTGCATTGGCTTGTTGTGAAGCTGATGTTGAAAAGAGATTGGATGTCAAAGAAGCTGTGGATAGAATCCAAGAGGTGAAGGAGAGTGGTGAAATTGATCTTAATTAA 1863 0.4385 MALILVSAAVAILMMHSVAVGASDTDLLLKFKESLQINNDALSSWNSTTPPCNGAKANWPHILCYNGNTWGIKLERMGIKGSIDVDALKGLPYLRTLSLMHNNLEGSWPELNKLPGLKAIYLSDNHFSGEIPTDAFAGLQWLKKIYLSNNKFSGPLPSSLSTMPRLRELRLEGNQFSGNIPSMPPTLRSMSLADNKLQGQIPSDLTKFPRASFAGNKKLCGAPLHNKCPSNKTSLASIIVLAIFAAVAIFVIAAVIVLLLHRKKQRQQRREPSSSFESPSIPSSFHKKVGDLSDDGGSHRSLRSTGSSRGSKKHSMRLSFVKREDDREEFDMQDLLKASAEILGSGCYSSSYKASLLSGPMVVVKRFKQMNNCNKEEFQEHMRRIGMLSHPNLLPLVAYYYRREEKLLITDFVPNGSLAVRLHGHQALGQPSLDWPTRLKIVKGISKGLEYLYKEMPSLIAPHGHLKSSNVLLNENYEPVLTDYGLVPVINQELASDIMVIYKSPEYLQQGRVTKKTDVWSLGILILEILTGKFPANFLQQGRGSELSLANWVDSVVPEEWSSEVFDKEMSASKENEVEMAKLLRIALACCEADVEKRLDVKEAVDRIQEVKESGEIDLN 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03398 620 Gene3D Phosphorylase Kinase; domain 1 303 412 - -
Aip05g03398 620 SUPERFAMILY Protein kinase-like (PK-like) 341 609 IPR011009 -
Aip05g03398 620 Pfam Leucine rich repeat 115 176 IPR001611 GO:0005515
Aip05g03398 620 Pfam Leucine rich repeat N-terminal domain 23 64 IPR013210 -
Aip05g03398 620 Pfam Protein tyrosine and serine/threonine kinase 341 606 IPR001245 GO:0004672|GO:0006468
Aip05g03398 620 MobiDBLite consensus disorder prediction 267 318 - -
Aip05g03398 620 Gene3D Ribonuclease Inhibitor 136 183 IPR032675 -
Aip05g03398 620 Gene3D Ribonuclease Inhibitor 23 135 IPR032675 -
Aip05g03398 620 ProSiteProfiles Protein kinase domain profile. 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g03398 620 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 614 - -
Aip05g03398 620 SUPERFAMILY L domain-like 23 224 - -
Aip05g03398 620 Gene3D Transferase(Phosphotransferase) domain 1 413 618 - -
Aip05g03398 620 MobiDBLite consensus disorder prediction 299 314 - -
Aip05g03398 620 ProSiteProfiles Leucine-rich repeat profile. 93 115 IPR001611 GO:0005515
Aip05g03398 620 Gene3D Ribonuclease Inhibitor 184 231 IPR032675 -
Aip05g03398 620 PANTHER LRR RECEPTOR-LIKE KINASE 10 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03398 Aip-Chr5 140301872 140306097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03398 4 613 Receptor kinase-like Gene Family AT5G35390 50.553 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aip05g03398 PK_Tyr_Ser-Thr 4.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03398 - - ccaj:109803310 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03398 05 140301872 140306097 Aip05g03398 05 140301872 140306097 ECH
Aip03g02966 03 85334781 85337332 Aip05g03398 05 140301872 140306097 PCT