Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03394 ATGAAGACGCAGCCTGAACCTGCCGCCGTCGTCGCCGTACCTAACCCCGAAGAGAAGAAGAGCATCAACCCGGAGCTATGGCAAGCGTGTGCGGGGCCGTTGGTGAACCTTCCGCCGGCGGGAACACACGTCTTCTACTTCCCTCAAGGACACAGTGAGCAGGTCGCAGCGTCTTTGAAGAAAGATGTGGATGGACAGATTCCTAACTATCCTAATCTTCCATCCAAGTTGTTGTGTCTCCTTCACAGTGTTACTTTGCATGCTGACCCTGAAACCGATGAAGTTTATGCTCAGATGACACTTCAACCTGTGCCTTCTTATGATAAGGAAGCTTTATTAAGATCAGATCTTGCTCTCAAGTCAAACAAGGCACAGCCTGAGTTTTTCTGCAAACAGCTGACAGCTAGTGATACAAGCACACATGGAGGTTTCTCTGTGCCTCGCCGAGCAGCAGAGAAAATATTCCCTCCTCTTGATTATTCTATGCAACCTCCTGCCCAAGAACTTGTGGCTAGGGATTTGCATGATAATGTTTGGACTTTCCGTCATATATATCGAGGGCAACCAAAGCGCCACTTGCTTACAACTGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTCTTTGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAGCAGCTTCTTTTGGGAATCAGGCGAGCTAACAGGCAACCAGCCAACATATCATCCTCGGTATTGTCAAGTGATAGTATGCATATTGGGATTCTTGCGGCAGCTGCTCATGCTGCTGCAAATAATAGTCCCTTTACCGTCTTTTACAATCCTAGGGCTAGTCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTGTACAGCCATCAAATATCACCTGGAATGCGTTTCCGAATGATGTTTGAAACCGAAGACTCAGGAACTAGAAGGTATATGGGTACAATTACAGGAATCAGTGATCTAGATCCTGTGAGATGGAAAAATTCACAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGGGAAAAGCGTAGCAGGGTTTCACTTTGGGAAATTGAACCACGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCTCAAGGCCTACCTGGCATGAGCTTAGTTCAATGGATGAACATGCAGCAAAATCCTAGTCTTGCTAACTCAATGCAGCCTAATTATGTACCATCATTGCCTGGATCTGTTTTGCAAAATCTTCCTGGTGCAGATATTTCCCGTCAGCTGGGGTTTTCTTCTTCACAAATTCCTCAGCCTAACAATGTAGCCTTCAACACTCAGAGGCTTCTTCAGACTGCACAACAACTTGATCATCTTCAGAAGCTACCGTCAACATCTGTCAACTTGGGAACAGTGATGCAGCCGCAGCAACAGTTGGGTGATATCTCTCAACAATCTAGGCAGAGCTTAGGAAGTCAAACTCTTCCACAGAGTCAAGTTCAGGCCCAGATCTTGCATCCCCAGAATCTTGTCCAAACAAACAATATTCTTCAACAGCAACAATCATCCATTCAAAACCACCAATTCAATCGAAGTGTCCCTCAGAACCCTCCACAGCAGCAGCAACAGCAACAGACAATTATGGGTCAGAATCAGCAACAAACTATGGTCCCATCTACTATACCTGACCATGTTCAACAGTTACAGATGTCTGATAATCAGATTCAGCTTCAATTGTTACAAAAGCTTCAACAGCAACAGCAAACACTCTTAGCACAACAATCTGCGCTGCAGCAGCCTTCTCAACTTGCTCAAATCCAAGATCAGCAGAGGCAACTGTTAGATGCAGCACAGAGCTTCTCTAGGTTAGTCCCTCCTGGTCAAGTGCTTGAAATTCCTCCGGTACATCAAAATTCACTCCCAGAGAGTAATGCTATCACAAATCAAATGACAAAGGCTAATGGTCGGAGCAATATACATATCTCTCATTTGCCTCAGCAGCCAAAGCTTCAGCAACAATCTGGCTTGCTGCCTGAGATGTCTGGTCAAATGGCACTTCCCCCTACCCCTTCACCAAACCAGCTCTCTGCTGCTGGCAGTGGCATACTGAATGGAGCAGCTGTAGCTGGACAATCTGTAATTACTGATGATGTTCCATCTTGCTCCACCTCACCTTCTACAAATAACTCTGCCAGTGCAGTTCCATTATTGATAAATTCCCGATTACATAGAAGCTCAATAACTGCTGATGACATGGCTCAATCTACTGCAACATTATTGAGTTCAGGTGCTTTAGAAACCATGTCATCAGGTGCAAACATGGTAAAAGATTTACAGCCCAAGTCTGAAGTCAAGCCTTCTTTAAACATCTCCAAAAATCAGAATCAAGGGAGTTTGCATCAGACATACTTGAATGGTGCTGCTGCTCAAACAGATTATTTGGATACATCATCTTCTACAACTTCAGTTTGCCTATCTCAGAGTGATGCTCACATGCATCAGAATAACAACCCGATGTCTTACAATCCACAGTCTATGTTGTTTAGAGACAACAGTCAGGATGGGGAAGTTCAGGCAGATACTAGGAGTAATGTTCCATATGGCAATAATGTTGATAACCAAATGGGAATGCCATTGAATCCAGATTCTCTTTTACCCAAAGGCACAGTGGGGATGGGGAAGGATATGTCGAATAATTTCTCTTCAGGAGATGATAGTAGCTTCTTGAATAGGGGTGGATGGGCTCCACCACCACCACCACCGCCATTGCCAGCACCACAGTTTCAGCGTATGAGGACATATACCAAGGTTTATAAACGAGGAGCTGTTGGAAGGTCCATAGACATCACTCGGTATTCAGATTATGAGGAGCTTAAACACGATCTAGCTCGCAGATTTGGCATAGAGGGCCAGCTGGAGGATCGACACAGGATAGGCTGGAAACTTGTCTATGTAGATCATGAAAATGATGTTCTACTAGTGGGAGACGACCCTTGGGAGGAGTTTGTTAATTGTGTACGCTGTATCAAGATTCTTTCTCCCCAAGAAGTACAACAGATGAGCTTGGATGGAGATTTTGGCAATGCTAGCCTTCCAAATCAAGCTTGTAGCAGCTCTGATGGTGGGAATACTTGA 3120 0.449 MKTQPEPAAVVAVPNPEEKKSINPELWQACAGPLVNLPPAGTHVFYFPQGHSEQVAASLKKDVDGQIPNYPNLPSKLLCLLHSVTLHADPETDEVYAQMTLQPVPSYDKEALLRSDLALKSNKAQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSLWEIEPRTMPWLGDDMCMKDPQGLPGMSLVQWMNMQQNPSLANSMQPNYVPSLPGSVLQNLPGADISRQLGFSSSQIPQPNNVAFNTQRLLQTAQQLDHLQKLPSTSVNLGTVMQPQQQLGDISQQSRQSLGSQTLPQSQVQAQILHPQNLVQTNNILQQQQSSIQNHQFNRSVPQNPPQQQQQQQTIMGQNQQQTMVPSTIPDHVQQLQMSDNQIQLQLLQKLQQQQQTLLAQQSALQQPSQLAQIQDQQRQLLDAAQSFSRLVPPGQVLEIPPVHQNSLPESNAITNQMTKANGRSNIHISHLPQQPKLQQQSGLLPEMSGQMALPPTPSPNQLSAAGSGILNGAAVAGQSVITDDVPSCSTSPSTNNSASAVPLLINSRLHRSSITADDMAQSTATLLSSGALETMSSGANMVKDLQPKSEVKPSLNISKNQNQGSLHQTYLNGAAAQTDYLDTSSSTTSVCLSQSDAHMHQNNNPMSYNPQSMLFRDNSQDGEVQADTRSNVPYGNNVDNQMGMPLNPDSLLPKGTVGMGKDMSNNFSSGDDSSFLNRGGWAPPPPPPPLPAPQFQRMRTYTKVYKRGAVGRSIDITRYSDYEELKHDLARRFGIEGQLEDRHRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNASLPNQACSSSDGGNT 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03394 1039 Gene3D - 293 363 - -
Aip05g03394 1039 SMART B3_2 129 231 IPR003340 GO:0003677
Aip05g03394 1039 Gene3D - 922 1016 - -
Aip05g03394 1039 MobiDBLite consensus disorder prediction 908 922 - -
Aip05g03394 1039 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 362 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip05g03394 1039 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 899 1034 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip05g03394 1039 SUPERFAMILY DNA-binding pseudobarrel domain 119 258 IPR015300 -
Aip05g03394 1039 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip05g03394 1039 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 361 898 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip05g03394 1039 MobiDBLite consensus disorder prediction 894 922 - -
Aip05g03394 1039 CDD B3_DNA 128 220 IPR003340 GO:0003677
Aip05g03394 1039 Gene3D - 127 230 IPR015300 -
Aip05g03394 1039 PANTHER AUXIN RESPONSE FACTOR 8 362 - -
Aip05g03394 1039 PANTHER AUXIN RESPONSE FACTOR 361 898 - -
Aip05g03394 1039 PANTHER AUXIN RESPONSE FACTOR 899 1034 - -
Aip05g03394 1039 Pfam AUX/IAA family 927 1012 IPR033389 -
Aip05g03394 1039 ProSiteProfiles PB1 domain profile. 927 1011 IPR000270 GO:0005515
Aip05g03394 1039 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Aip05g03394 1039 SUPERFAMILY CAD & PB1 domains 941 1005 - -
Aip05g03394 1039 MobiDBLite consensus disorder prediction 516 550 - -
Aip05g03394 1039 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03394 Aip-Chr5 140257225 140264237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03394 15 444 B3 DNA Binding Superfamily AT1G19220 67.368 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip05g03394 B3 1.5e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03394 - - ccaj:109803454 1556.58