Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03350 ATGGTGTATTTGGCTATGTTGTTCAGCTGGTTCGCTTGGCATGTTGAGGACCATGACCTCCATAGCTTGAATTACCTTCACATGGGTTCTGGGAAGACCTGGTATGGCGTGCCGAGAGATGCAGCCATGGCGTTCGAAGATGTTGTTAGGGTTCATGGATATGGCTCTGAGATTAATCTTCTTGAGAGTTGCCTATTGAAGTCTTCTTGTGTCTTTCGCGGTCGACAAAGAGAACAACAATCGGGCAGTGGCGCAGCTTCAGTTGAGGTAGATTGTTACAATAGCTTATCTCCTTCTTTGGGAATCGAAGACAAGGCAAAATCCAGTGGGAGGATATTGGCACCGGTGTGCGGTTGA 357 0.4762 MVYLAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAMAFEDVVRVHGYGSEINLLESCLLKSSCVFRGRQREQQSGSGAASVEVDCYNSLSPSLGIEDKAKSSGRILAPVCG 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03350 118 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 62 - -
Aip05g03350 118 Gene3D Cupin 1 80 - -
Aip05g03350 118 SUPERFAMILY Clavaminate synthase-like 1 62 - -
Aip05g03350 118 Pfam JmjC domain, hydroxylase 1 54 IPR003347 -
Aip05g03350 118 ProSiteProfiles JmjC domain profile. 1 118 IPR003347 -
Aip05g03350 118 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03350 Aip-Chr5 139626204 139628247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03350 1 63 C2H2 Transcription Factor Family AT5G04240 65.079 3.63e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aip05g03350 JmjC 5.1e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03350 - - ahf:114925382 135.191