Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03341 ATGATGCTCGGGGAGCACCATCGTGCAAATCCTACGGTTCACGTGCCACCGTGGCCGATCCTCGATGATCAAACGGCTGATATGTACTCTCCTTATTCCGTAACCGAAGGCAATGCTGGCGCAGGCGATTACTCTCCTTACTATCTACAAGAAGCTCTGTCCGCCTTGCAGCGATACCTGCCGTCGAATGATGCTGCCGGCGACGGTGGTGATTCCGACGGGGAGGCTCAGGCTGACGCGCCGGTTGACGCGTACTCGTGTGACCAGTTCCGCATGTACGAGTTCAAAGTGAGGCGATGCGCGCGCGGGAGGTCGCACGACTGGACGGAGTGTCCGTACGCTCATCCTGGCGAGAAGGCTCGCCGTCGTGATCCACGGAAGTTTCACTACTCCGGGACGGCGTGTCCCGATTTCCGCAAGGGAAACTGTAAGAAAGGTGACTCGTGCGAGTACGCGCACGGCGTCTTCGAGTGCTGGCTTCATCCAGCGAGGTACCGTACTCAGCCGTGCAAGGACGGCACGAGCTGCCGCCGGAGGGTGTGCTTCTTCGCGCACACGCCGGAGCAGCTTCGTGTCCTCCCGCAACAGAGTCCTCGAAGCGTGGATTCGTACGACGGATCTCCATTAAGACAAGTCTCGATGCCGTTCGTGTCGTCACCGACTTCAGTTTCGCCGCCGGTTAGTTCTCCGGTGGATTCTCCGCCGATGTCGCCGATGATGAGGTCGCTCGGCTCAAGTAACATGTCTGATATGGTTGTTGCTCAACTGAGAAACTTGCAGCTTGGGAAGATGAAATCGATGCCTAATAGTAACAGGAACGTGACGGTTGGATCTCCGGGTTTCGGATCTCCCCGCGGATCTGTTATCCGGCCCGGATTCTGCAGTCTACCAACAACACCCACACAGGCACCGGTTCGGTTCGGGTCGAATTGTTTCGAGTTGTGGGAGCAGAGTTTCGAGGAGGAGCCAGTTATGGAGAGGGTGGAGTCTGGAAGGGACATAAGGGCGAAGATGTTTGAGAAGCTGAGCAAGGAGAATTCTCTGGATAGGTCCGGTTCTGGTTCGGGTCGTCAATCGGGTGGAGTCCCGGATCTTGGGTGGGCCTCTGAGCTTGTTAAGTGA 1122 0.5722 MMLGEHHRANPTVHVPPWPILDDQTADMYSPYSVTEGNAGAGDYSPYYLQEALSALQRYLPSNDAAGDGGDSDGEAQADAPVDAYSCDQFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSVDSYDGSPLRQVSMPFVSSPTSVSPPVSSPVDSPPMSPMMRSLGSSNMSDMVVAQLRNLQLGKMKSMPNSNRNVTVGSPGFGSPRGSVIRPGFCSLPTTPTQAPVRFGSNCFELWEQSFEEEPVMERVESGRDIRAKMFEKLSKENSLDRSGSGSGRQSGGVPDLGWASELVK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03341 373 PANTHER UNKEMPT FAMILY MEMBER 7 373 IPR045234 -
Aip05g03341 373 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Aip05g03341 373 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Aip05g03341 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 373 - -
Aip05g03341 373 MobiDBLite consensus disorder prediction 344 373 - -
Aip05g03341 373 Gene3D - 129 193 - -
Aip05g03341 373 MobiDBLite consensus disorder prediction 215 238 - -
Aip05g03341 373 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Aip05g03341 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03341 Aip-Chr5 139579110 139580231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03341 85 238 C2H2 Transcription Factor Family AT5G12850 58.125 1.99e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip05g03341 zf-CCCH 9.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03341 - - aprc:113867365 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03341 05 139579110 139580231 Aip05g03341 05 139579110 139580231 ECH