Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03334 ATGAATAATAATAAGATAAGCAACTTGAGCTCCGTGAGTAGCTCCGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTGGTGTGGAGGATCCAAGCAGTGCCCCGGTTGCGGCCACAAGTTTGAATCCAAACCGGATTGGCTAGGTTTACCAGCAGGAGTGAAGTTTGATCCAACAGATCAAGAACTAATAGAGCATCTTGAAGCCAAAGTGGAGTCAAAGAACATGAAATCACACCCTTTGATAGATGAATTCATTCCCACCATTGAAGGTGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGATTAAGTAAACACTTCTTCCATAGGCCTTCAAAGGCATACACAACAGGAACAAGAAAGAGGAGAAAGATTCAAAATGAGTGTGACTTGCAAGGTGGAGAAACAAGGTGGCATAAGACCGGTAAAACAAGACCGGTCATGGTTAACGGAAAACAGAAGGGTTGCAAGAAGATTTTGGTACTCTACACTAACTTCGGCAAGAATCGGAAGCCGGAGAAGACGAATTGGGTGATGCATCAATACCATTTGGGGCAACATGAGGAGGAGAAAGAAGGAGAGCTTGTTGTGTCTAAGATATTCTACCAAACTCAGCCTAGGCAGTGTAATTGGTCGTCCGATCGGAGCGCCACCACCACCATCGCAACGGCCGAAGGGAGTGGAGAGCCATTACAAAATAGTAGAAGGGATAGTGGGAGTGGAAGTTGTTCTTCTAAGGAAATTAACATCGGTCATAGGGATGAGATGTCTGCTGTGGTTGGAGTTAATAATACTCCAATCACGAGCTTCACTCATCCCTTGGACATTCATCATCACCTCAAATCGGATCATTTTAGCTTCATTCCATTTAGGAAAAACTTTGATGAGGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTTCAAGCATCAGGGTCATGTGATGAAGTAGTACATGAACATCAACAACAACAACAACAACATCAACACCATCATCATAAAATTGGAGCAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCTTCTGATATCAAAGAGGAGTCATCCATCACAAACACACAAGAAGCTGAATGGTTGAAATACTCTTCCTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1185 0.4414 MNNNKISNLSSVSSSDLIDAKLEEHQWCGGSKQCPGCGHKFESKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSSDRSATTTIATAEGSGEPLQNSRRDSGSGSCSSKEINIGHRDEMSAVVGVNNTPITSFTHPLDIHHHLKSDHFSFIPFRKNFDEVGIGEASTAREVQASGSCDEVVHEHQQQQQQHQHHHHKIGARSASGLEELIMGCTSSDIKEESSITNTQEAEWLKYSSYWPDPDNPDHHG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03334 394 Pfam No apical meristem (NAM) protein 51 192 IPR003441 GO:0003677|GO:0006355
Aip05g03334 394 Gene3D NAC domain 59 215 IPR036093 GO:0003677|GO:0006355
Aip05g03334 394 MobiDBLite consensus disorder prediction 230 255 - -
Aip05g03334 394 ProSiteProfiles NAC domain profile. 50 211 IPR003441 GO:0003677|GO:0006355
Aip05g03334 394 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 341 IPR044799 GO:0003700
Aip05g03334 394 SUPERFAMILY NAC domain 45 211 IPR036093 GO:0003677|GO:0006355
Aip05g03334 394 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 5 341 - -
Aip05g03334 394 MobiDBLite consensus disorder prediction 230 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03334 Aip-Chr5 139317608 139321913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03334 13 391 NAC Transcription Factor Family AT5G56620 50.787 8.47e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip05g03334 NAM 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03334 - - aip:107641312 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03334 05 139317608 139321913 Aip05g03334 05 139317608 139321913 ECH