Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03319 ATGGCGATTTCAAATTCGCATTACATTTTGTGTGTTACAATAGCAATCCTTGTGATGGTTGTTCAAAATTCAAGAAGTACATATTGCCGGCACCATGATGATGGCACTAGAAAGGGAATTCGATTGAGGAACGGATTATTGTCCAACATGAGTAGGATAGAGTTCTCGGAAGAACAGTTCATGAAATGGGTCAACTTTGTTGGTAACCTCAATCATTCAATGTTCAAGGCTGCAAAGAACAAGCTCTTTGCTTCCTACACTTTGCATGTTGATAACAACCCTGCACTTGGTGACTTCACTTCCATTCAAGACGCCATTGATTCTCTTCCTTCCATTAATCTTGTTAGAGTCCTCATCAAGGTTCATGCAGGTCTTTACACGGAGAAAGTGAGCATTCCTCAATTGAAATGGTTCGTAACAATAGAAGGAGCAGGTGCAGATAAAACAATAGTTCAATATGGTGACACAGCACAAACACTTGGCCCAAATGGGAGGCCATTGGGAACCTACGGTTCTGCTACTTTTGCTGTTAATTCACCTTATTTTATTGCAAAGAACATCACATTCAAGAACACTACTCCAGTCCCTGCACCAGGAGCAATTGGGAAACAGGCAGTGGCATTCAGGATTTCAGCGGACACAGCAGCATTCTATGGATGCAGTTTCTTGGGTGCACAGGACACACTCTATGATCATATGGGAAGACATTATTATAAGGATTGTTACATTGAAGGCTCTGTTGATTTCATATTCGGAAACGCTCTCTCTCTATTTGAGGGGTGTCACGTGCATGCAATAGCACAGAATATGGGAGCAGTAACGGCGCAGGGGAGGAGTAGCATGTTGGAGGACACGGGGTTCTCATTCGTGAACTGTAAGGTCACGGGGTCAGGGGCACTATACCTGGGAAGGGCATGGGGTCCCTTTTCTCGCGTGGTATTCGCCTATACATATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAATCGTGAATTGACTGTATTCTATGGACAATACAAATGCACAGGAGCAGGAGCAAGCTTTGCTGGGAGGGTATCATGGTCAAGGGAACTCACTGACGATGAAGCCAAGCCTTTTCTTTCTCTTTCCTTTGTTGATGGCACAGAATGGATCAATCTTTGA 1161 0.4401 MAISNSHYILCVTIAILVMVVQNSRSTYCRHHDDGTRKGIRLRNGLLSNMSRIEFSEEQFMKWVNFVGNLNHSMFKAAKNKLFASYTLHVDNNPALGDFTSIQDAIDSLPSINLVRVLIKVHAGLYTEKVSIPQLKWFVTIEGAGADKTIVQYGDTAQTLGPNGRPLGTYGSATFAVNSPYFIAKNITFKNTTPVPAPGAIGKQAVAFRISADTAAFYGCSFLGAQDTLYDHMGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNMGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRELTVFYGQYKCTGAGASFAGRVSWSRELTDDEAKPFLSLSFVDGTEWINL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03319 386 SUPERFAMILY Pectin lyase-like 84 385 IPR011050 -
Aip05g03319 386 Pfam Pectinesterase 97 380 IPR000070 GO:0030599|GO:0042545
Aip05g03319 386 PANTHER PECTINESTERASE 16 385 - -
Aip05g03319 386 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 16 385 - -
Aip05g03319 386 ProSitePatterns Pectinesterase signature 2. 243 252 IPR033131 -
Aip05g03319 386 Gene3D - 84 386 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03319 Aip-Chr5 139043780 139047159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03319 99 384 Carbohydrate Esterase AT5G47500 50.871 7.49e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03319 K01051 - gmx:100793314 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03319 05 139043780 139047159 Aip05g03319 05 139043780 139047159 ECH