Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03297 ATGGGTTCACCCCCAATGAATAAGGGAGAGAGGAAAATAGAGAGAGGTTCCATAGCTATAATCTTGAGATATGCAGATTGTGTTGATGTTTTGCTTATGTTAATGGGTGCTGTTGGAGCAGTTGGAGATGGCATGTCCACAAACATTCTTCTCATCTTCGCTAGCCGCATCATGAACAGCTTAGGATATGGCAACCAACAAAGTAGTGGCACTGCCAACAATTACATGTCCCAGGTTGAAAAGTGCAGCTTGTATTTTGTGTACTTGGGACTAGCAGTGATGGTGTTGGCCTTCATGGAAGGGTACTGTTGGAGTAAAACAAGTGAGAGGCAGGTGTTGAGAATTCGGTACAAGTATTTGGAAGCTGTTCTAAGACAAGAAGTGGGGTTTTTTGAATCACAAGAAGCAACTACTTCTGAAATCATCAATTCCATATCAAAAGACACTTCTCTCGTCCAAGAAGTCCTAAGTGAAAAGGTGCCACTATTCTTAATGCACTCATCATCATTCATCTCTGGGATTGCTTTTGCCACCTACTTCTCATGGAGGCTGGCCTTAGTAGCATTCCCAACACTTGTTCTTCTCATAATCCCCGGCATGATCTATGGCAAATACCTAATCTATTTGTCAAAGTCATCTGCCAAGGAGTACGGCAAGGCGAACGCCATCGTCGAGCAGGCGTTAAGCTCCATCAAAACCATTTATTCGTTCACAGCCGAGAGGAGAATCCTTGTGAGGTATTCAGAGATCTTAGAGAGAACCTCAAGGCTTGGAATCAAGCAAGGGATAGCAAAGGGTTTAGCTGTTGGAAGCACAGGTTTATGCTTTGCAATTTGGGCTTTTCTTGCTTGGTATGGAAGCCATTTGGTTATGTACAAAGCTGAAAGTGGTGGAAGGATCTATGCAGCTGGAATTTGCTTCATTATGAGTGGACAATCCCTTGGAGTGGTACTTCCAGATTTGAAGTACTTGACCGAAGCATCAGTAGCATCCACAAGAATCTTCAACATGATTGACAGAAAAGCAGTAATTGATGGTGAAGACACAACAAAGGGAATAGTGCTAGACCAAATTAACGGGAACCTAGACTTTGAACATGTGAAATTCACATACCGTTCAAGACCAGACAACCTCGTACTCAATGACTTCAATCTGAGGGTTGAATCAGGCAAAACGGTTGCACTTGTTGGTGCAAGTGGGAGTGGAAAGTCAACGGCAATAGCGTTGGTGCAAAGGTTCTATGATGTGGATGAAGGTGTTGTGAGGGTTGATGGTGTTGACATAAAGAGCTTGCAGTTGAAGTGGTTGAGGGGTAAAATGGGGCTTGTGAGTCAAGAACATGCATTGTTTGGGACATCTATTAAGGAGAATATTATGTTTGGAAAGCTTGATGCTACCATGGATGAGGTTGTTGCTGCTGCTACTGCTGCTAATGCTCATAACTTTGTTAGGCAGCTCCCTCAGGGTTATGAAACCAAGATTGGAGAAAGGGGAGCACTTCTTTCAGGAGGACAAAAGCAGCGAATAGCAATTGCAAGAGCCATCATAAAGAATCCAGTGATTCTTCTTCTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCTGAATTACTTGTCCAAAATGCCCTTGATCATGCCTCATTGGGCAGGACTACATTGGTTGTTGCACACAAGCTATCAACGGTCCGAAACGCAGATGTCATAGCTGTTGTCAACGGCGGTTGCATCATCGAAATCGGCACGCACAACGAGCTCATAACCCGTCCAAACGGCCACTATGCAAAGCTAGCAAAACTCCAAACACAACTCAGCTTTGATGATCAACAAGAAATATCCAATGCTCTTTCTTCTGCAGCAAGAAGCAGTGCTGGTAGAACCAGCACAGCAAGATCAACAAGCCCTGCAATGTTCCAAAAATCACCAATCCCTATTGATGATAACACCATAACCCCAGAATCATCTCTTGTTTCTCACCCTTCACCTTCTTTCCCAAGGCTTCTATCTCTGAATGCACCTGAATGGAAACAAGGTTTAATTGGTACTTTTTCCGCAATAGCTTTCGGCTCAGTGCAGCCCATATATGCCTTAACAATTGGTGGCATGATTTCTGCATTTTTCGCCGAAAGCCATAGTGAAATGATTCACAGAATCAGGACTTACTCTTTGATTTTCACTTCTCTTTCTCTTGCTTCCATCACACTCAACCTCTTGCAGCACTACAATTTCGCATACATGGGAGCAAAATTAACAAAAAGGATACGGCAGAGAATGCTTGAGAATATCTTAACATTCGAAACGGCTTGGTTCGATGAAGAACATAACTCCAGTGGAGCATTGTGCTCAAGGCTAAGCAATGAGGCTTCCATGGTTAAGTCCCTTGTCGCGGATCGCGTTTCATTGCTTGTTCAAACAGCTTCTGCTGTCAGTATTGCAATGATCATAGGACTCGCCGTGGCGTGGAAGCTCGCTCTTGTGATGATAGCAGTGCAGCCACTCACAATCCTCTGCTTCTACACAAGAAAAGTTCTTCTCTCTACACTCTCATCAAAATTCATCAAGGCACAGAATCATAGCACACAGATTGCAGTTGAAGCAGTGTACAACCACAGAATTGTGACTTCATTTGGAAGCATACAAAAGGTTTTGACATTATTCGATGAAGCGCAGGAGGCGCCAAGGAAGGAGGCGAGGAAGAAGTCATGGCTGGCCGGGATTGGAATGGGGTCTGCTCAATGCCTAACATTCATGACATGGGCTTTGGATTTCTGGTATGGAGGGACATTGGTGGAGAAGAAGGATATTTCTGCAGGGGATGTGTTTAAGACATTCTTTGTTTTGGTTAGCACTGGGAAGGTCATTGCTGAAGCTGGAAGCATGACTTCTGATCTTGCAAAGTCCTCAACTGCTGTCAAATCTGTTTTTGAGATTCTTGACAGGAAATCACTTATTCCCAAGGCTGGTGATTGCAACAACGGAAGAAAGTTGGAAAATATGAGTGGGAAGATAGAATTAAAGAACGTTGATTTCGCCTACCCAAGTAGGGCAGGAACACCGGTATTGCGCAAGTTTTGCTTGGAGGTGAAGGCAGNNNNTGGTTGTGGAAAATCAACAGTGATTGCATTGATCCAAAGATTCTATGATGTTGAGAGAGGGTTTGTGAAAGTGGACAATGTGGACATAAGGGAACTAGATATTCAATGGTATAGGCAGCACACTGCACTTGTTAGCCAAGAACCTGTCATATATTCTGGCACTGTAAGGGACAACATCTTGTTTGGGAAGCAAGATGCAACTGAGAATGAAGTTGTTGAAGCTGCAAAAGCCGCAAATGCTCATGAGTTCATATCATCATTGAAAGATGGATATGAAACAGAATGTGGAGAAAGGGGAGTGCAACTATCTGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCCATAATAAGGAACCCAACAATATTGCTGCTTGACGAAGCAACAAGTGCACTTGATGTTCAATCAGAACAAGTTGTGCAAGAAGCATTAGACAGGATCATGGTGGGAAGAACCACCATTGTTGTAGCACATAGGCTCAACACCATCAAAGAACTTGACTCGATTGCATATGTCTCAGAGGGTAAGGTTCTTGAGCAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAATCTTGCATGCCATCAAATCCAAAATTAG 3705 0.4359 MGSPPMNKGERKIERGSIAIILRYADCVDVLLMLMGAVGAVGDGMSTNILLIFASRIMNSLGYGNQQSSGTANNYMSQVEKCSLYFVYLGLAVMVLAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFESQEATTSEIINSISKDTSLVQEVLSEKVPLFLMHSSSFISGIAFATYFSWRLALVAFPTLVLLIIPGMIYGKYLIYLSKSSAKEYGKANAIVEQALSSIKTIYSFTAERRILVRYSEILERTSRLGIKQGIAKGLAVGSTGLCFAIWAFLAWYGSHLVMYKAESGGRIYAAGICFIMSGQSLGVVLPDLKYLTEASVASTRIFNMIDRKAVIDGEDTTKGIVLDQINGNLDFEHVKFTYRSRPDNLVLNDFNLRVESGKTVALVGASGSGKSTAIALVQRFYDVDEGVVRVDGVDIKSLQLKWLRGKMGLVSQEHALFGTSIKENIMFGKLDATMDEVVAAATAANAHNFVRQLPQGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDHASLGRTTLVVAHKLSTVRNADVIAVVNGGCIIEIGTHNELITRPNGHYAKLAKLQTQLSFDDQQEISNALSSAARSSAGRTSTARSTSPAMFQKSPIPIDDNTITPESSLVSHPSPSFPRLLSLNAPEWKQGLIGTFSAIAFGSVQPIYALTIGGMISAFFAESHSEMIHRIRTYSLIFTSLSLASITLNLLQHYNFAYMGAKLTKRIRQRMLENILTFETAWFDEEHNSSGALCSRLSNEASMVKSLVADRVSLLVQTASAVSIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSSKFIKAQNHSTQIAVEAVYNHRIVTSFGSIQKVLTLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGTLVEKKDISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVKSVFEILDRKSLIPKAGDCNNGRKLENMSGKIELKNVDFAYPSRAGTPVLRKFCLEVKAXXGCGKSTVIALIQRFYDVERGFVKVDNVDIRELDIQWYRQHTALVSQEPVIYSGTVRDNILFGKQDATENEVVEAAKAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLACHQIQN 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03297 1234 Gene3D ABC transporter type 1, transmembrane domain 899 991 IPR036640 GO:0005524|GO:0016021
Aip05g03297 1234 Gene3D - 992 1231 IPR027417 -
Aip05g03297 1234 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 334 - -
Aip05g03297 1234 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Aip05g03297 1234 SUPERFAMILY ABC transporter transmembrane region 664 979 IPR036640 GO:0005524|GO:0016021
Aip05g03297 1234 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Aip05g03297 1234 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524
Aip05g03297 1234 Gene3D - 353 613 IPR027417 -
Aip05g03297 1234 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip05g03297 1234 Pfam ABC transporter transmembrane region 678 948 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip05g03297 1234 Pfam ABC transporter transmembrane region 38 296 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip05g03297 1234 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip05g03297 1234 SMART AAA_5 1021 1213 IPR003593 -
Aip05g03297 1234 SMART AAA_5 389 590 IPR003593 -
Aip05g03297 1234 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1230 IPR003439 GO:0005524
Aip05g03297 1234 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Aip05g03297 1234 Pfam ABC transporter 1032 1161 IPR003439 GO:0005524
Aip05g03297 1234 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Aip05g03297 1234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 600 IPR027417 -
Aip05g03297 1234 SUPERFAMILY ABC transporter transmembrane region 21 341 IPR036640 GO:0005524|GO:0016021
Aip05g03297 1234 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Aip05g03297 1234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1231 IPR027417 -
Aip05g03297 1234 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 19 1231 - -
Aip05g03297 1234 Gene3D ABC transporter type 1, transmembrane domain 8 340 IPR036640 GO:0005524|GO:0016021
Aip05g03297 1234 Gene3D ABC transporter type 1, transmembrane domain 614 898 IPR036640 GO:0005524|GO:0016021
Aip05g03297 1234 MobiDBLite consensus disorder prediction 616 643 - -
Aip05g03297 1234 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 19 1231 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03297 Aip-Chr5 138571224 138578828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03297 34 620 Calmodulin-binding Proteins AT2G36910 34.746 1.14e-100 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03297 K05658 - gmx:100801088 2004.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03297 05 138571224 138578828 Aip05g03297 05 138571224 138578828 ECH