Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03277 ATGGGAGTAGAGCCACGAACACCAAGCTCTGAAACGGAAACAGAAACAGTAGAAACTGGAAGAAGCACTGCCACATGTGCTTCACCACCATCAACACCAACTCTCACATCGAGCAAGAAGCGATCAAGGCAAAGCAATAAAAATGACAATGACAGGAATGCTAACACTAACAGCAAGCACCCTATATACAGAGGGGTCAGAATGCGCACGTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCACGCAAAAAGAGCCGCATCTGGCTCGGAACCTTCGCCACCGCCGACATGGCCGCGCGTGCACACGACGCCGCCGCTCTCACCATCAAAGGCTCCTCCGCGGATGAATCCTCTTCCTCTTCCACCACCACCACCACTACCACCTCCGAGGATGAGGAGCTTGGCGAAATCGTTGAGCTTCCTCCGCTTGGAAACAGCTTCGAAGTAGCTGAAGTAGATCCGAGTGGGATCAACGATCTTGATCAGTTGGTGTTCTTCGATCCGTTTGACGGTAACTGTTACCCTTGGAATCAGGGAAGCATTTATGATGATCACGATCATGATTGTTATGGCTGCTTCATTAATCATAACAATAATAATAACAGCAGCAACATCATGATGTCAATGCTGCTCGAGTCAGATTCTGTTCTTCCTTCTTCTCCTTCTAATCTTTCTATTTCTTCTTCTTCTTCTTTTTCTTCTTCCCTTCAATGTTCTCTCTGGCAACACTAA 732 0.4795 MGVEPRTPSSETETETVETGRSTATCASPPSTPTLTSSKKRSRQSNKNDNDRNANTNSKHPIYRGVRMRTWGKWVSEIREPRKKSRIWLGTFATADMAARAHDAAALTIKGSSADESSSSSTTTTTTTSEDEELGEIVELPPLGNSFEVAEVDPSGINDLDQLVFFDPFDGNCYPWNQGSIYDDHDHDCYGCFINHNNNNNSSNIMMSMLLESDSVLPSSPSNLSISSSSSFSSSLQCSLWQH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03277 243 CDD AP2 61 94 IPR001471 GO:0003700|GO:0006355
Aip05g03277 243 MobiDBLite consensus disorder prediction 111 131 - -
Aip05g03277 243 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Aip05g03277 243 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Aip05g03277 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 116 204 - -
Aip05g03277 243 MobiDBLite consensus disorder prediction 110 135 - -
Aip05g03277 243 SUPERFAMILY DNA-binding domain 62 114 IPR016177 GO:0003677
Aip05g03277 243 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Aip05g03277 243 MobiDBLite consensus disorder prediction 7 41 - -
Aip05g03277 243 MobiDBLite consensus disorder prediction 1 63 - -
Aip05g03277 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 21 114 - -
Aip05g03277 243 SMART rav1_2 62 121 IPR001471 GO:0003700|GO:0006355
Aip05g03277 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 116 204 - -
Aip05g03277 243 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Aip05g03277 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 114 - -
Aip05g03277 243 Gene3D AP2/ERF domain 62 116 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03277 Aip-Chr5 138235912 138236864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03277 59 175 AP2-EREBP Transcription Factor Family AT3G16280 45.399 7.93e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g03277 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03277 K09286 - aip:107641289 327.791