Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03244 ATGCACGAGTTCTTCTGGAACGACGATGATGAACACGCCGTGATCGTGCTCGAGTTTTTCAGGACAGACCTCGCTGCTGTAATCGCGGAAGCTGCTGCTGGTGGTGGTGGCCGTGGTTTTGATGTCGGTGAGGTGAAGAGGTGGATGATGCAGGTGCTTAGTGGTGTGGATGCTTGCCATAGGAACATGATCGTCCATAGAGACTTGAAGCCTTCCAATTTCTTGGTTTCAGATCATGGAGTGCTCAAATTGGCCCATTTCGGACAGGCAAGGATAATTATGGAGCCTGGATTTGACTCTACAGAGGAGAACCCACCACCACCATATGAGCATGATTATGCTTCTTCAGTTCCGGAGAGCTCATCAATTGAACATCCTTCTTCATCAGAGGCTTTTCCTCATGATCAAGGGACCATAAATCATGAAGAGTATTTCAGAGTTCTAGAAGAAATGAAATCCAAGAATACCATATATGACACTGATAAGGACCCAAACATCCAAGATGGAAACACCTCTTGTCTTGCAACTTGCACAACAAGTAACACTGATGATGGCGATGATGATCTCTGGAAGGCTTCGTTGACATTTGAAGCAGCGGAGGAGGAAGAAAGGAGGAATGAACTCGACTGTTGCCTCACACCACGTGTTGGAACTCGGTGGTATAAGGCTCCTGAATTGCTATATGGATCCACAGATTATGGTCTAGAGGTTGATCTATGGTCTTTAGGGTGTATATTTGCGGAATTGCTAACGTTGAAGCCTTTATTTCCTGGAACATCTGATGTAGATCAATTGAGTAGGATCGTTAGTGTTTTGGGAAACATTGATGGAGAATCTTGGCCTGGTTGTTCTAAGCTTCCTGATCATGCAACAACGTCGTTTGGTAATGTGGAGAGGCCTATTGATTTTGAAGAGTGCATGAAGAATTGCGGAAAGGATCAAGTGTCTATGATAAAGAAACTTGTTTGTTATGATCCAGCTAGGAGGGCCACAACAATGGAGATGCTTCACGATAAGTTCTTTAGTGAAGAGCCTTGA 1038 0.4461 MHEFFWNDDDEHAVIVLEFFRTDLAAVIAEAAAGGGGRGFDVGEVKRWMMQVLSGVDACHRNMIVHRDLKPSNFLVSDHGVLKLAHFGQARIIMEPGFDSTEENPPPPYEHDYASSVPESSSIEHPSSSEAFPHDQGTINHEEYFRVLEEMKSKNTIYDTDKDPNIQDGNTSCLATCTTSNTDDGDDDLWKASLTFEAAEEEERRNELDCCLTPRVGTRWYKAPELLYGSTDYGLEVDLWSLGCIFAELLTLKPLFPGTSDVDQLSRIVSVLGNIDGESWPGCSKLPDHATTSFGNVERPIDFEECMKNCGKDQVSMIKKLVCYDPARRATTMEMLHDKFFSEEP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03244 345 SMART serkin_6 1 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g03244 345 Pfam Protein kinase domain 203 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g03244 345 Pfam Protein kinase domain 8 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g03244 345 PANTHER CELL DIVISION PROTEIN KINASE 11 343 - -
Aip05g03244 345 ProSiteProfiles Protein kinase domain profile. 1 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g03244 345 Gene3D Transferase(Phosphotransferase) domain 1 1 118 - -
Aip05g03244 345 MobiDBLite consensus disorder prediction 115 135 - -
Aip05g03244 345 Gene3D Transferase(Phosphotransferase) domain 1 132 345 - -
Aip05g03244 345 MobiDBLite consensus disorder prediction 97 136 - -
Aip05g03244 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 64 76 IPR008271 GO:0004672|GO:0006468
Aip05g03244 345 SUPERFAMILY Protein kinase-like (PK-like) 2 343 IPR011009 -
Aip05g03244 345 PANTHER CYCLIN-DEPENDENT KINASE 10 11 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03244 Aip-Chr5 137583063 137584715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03244 1 345 Core Cell Cycle Gene Families AT4G28980 53.541 6.82e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Aip05g03244 Pkinase 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03244 - - adu:107490287 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03244 05 137583063 137584715 Aip05g03244 05 137583063 137584715 ECH