Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03223 ATGGTGTCGATTAATGGGATGGAGCAGAACAACGTGATCGCACCGTTCGTTATAAAGACATATCACATGGTCAACGATCCGAGCACCGATTACCTTATAGCATGGGGCCCAGCGAACAACAGCTTCATCGTCGTCGACCCTCTCGACTTCTCTCAGTCTCTACTCCCTGCCTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGGTGGATCCCGATAAGTGGGAGTTTGCAAACGAGTGGTTTCTGAGAGGGCAGAAGCACTTGCTGAAGAATATAGTTAGGAGAAAGCACGGGACGAGGAGCTATAATTCTTTGCATTTCAACAACCACCACCACGGTGGCAAGCAGCAGATTTTAGCGGCGGAGGAGCTCGACGATGAAGCCATGATGGTGGAGATAGCGAGGCTGAAGGAGGAGCAGAAGGCTTTGGAACAAGAGCTTCAAGGGATGAACAAGAGGTTGGAGACAACCGAGAAGAGACCACAGCAAATGATGGCCTTTCTATGCAAGGTCGTCGACGATCCCGAGGTTCTATCCAGGGTTCTTCTTGAGAGGGAGACCAGGCAAATCGCCGACAAGAAGCGCCGCCTTATCACGGCCGCGACCTCCTCGTCTTCGTCTTCCGGTGTTGCCATCAAGACGGAACTCGAGGAGGAGGAACCAACTGTCGGGAATATAATATCTTCTTCGCCGGAAACCGGCTTCGAAATTGATAATTTTTGCCACATGGCGTCGCCGTCGCCGCCGCAGGAAGCGGCGCCGGTGGCCATGGGGTGGTTGGGGCAGCCGCGGCCGAGGATTGGTCATCACTACCAACAGCAGGGGCATAATGGATATAGAAGTTATAATAACAATTATAATTATAGTTCCGCCGCCACACCGAAGCCGTTGACGGTGGTTCCTCCGACGGCGCCGCCGCAGGGTAATGGCACTGGTGGAGGTAAAGGTCACGTGAACTTTTTTAGTGAAATGGCGGCGGAGAATAGTCCACGGCCACCTTATCCGTTTTCACTATTAGAAGGCATGATTGCTGTAGGTTGGGAACTGTTTTGGTACCCTATCTCAGGGATCGTATATACGACAATTTCAAATAAAACATATGGAATTTGA 1140 0.5105 MVSINGMEQNNVIAPFVIKTYHMVNDPSTDYLIAWGPANNSFIVVDPLDFSQSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHGTRSYNSLHFNNHHHGGKQQILAAEELDDEAMMVEIARLKEEQKALEQELQGMNKRLETTEKRPQQMMAFLCKVVDDPEVLSRVLLERETRQIADKKRRLITAATSSSSSSGVAIKTELEEEEPTVGNIISSSPETGFEIDNFCHMASPSPPQEAAPVAMGWLGQPRPRIGHHYQQQGHNGYRSYNNNYNYSSAATPKPLTVVPPTAPPQGNGTGGGKGHVNFFSEMAAENSPRPPYPFSLLEGMIAVGWELFWYPISGIVYTTISNKTYGI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03223 379 Coils Coil 136 170 - -
Aip05g03223 379 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03223 379 Gene3D - 8 106 IPR036388 -
Aip05g03223 379 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03223 379 SUPERFAMILY "Winged helix" DNA-binding domain 13 105 IPR036390 -
Aip05g03223 379 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 14 347 - -
Aip05g03223 379 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03223 379 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03223 379 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03223 379 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g03223 379 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 347 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03223 Aip-Chr5 136950399 136952431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03223 12 215 HSF AT3G24520 62.981 3.49e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip05g03223 HSF_DNA-bind 5.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03223 K09419 - gmx:100794896 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03223 05 136950399 136952431 Aip05g03223 05 136950399 136952431 ECH